Changeset View
Changeset View
Standalone View
Standalone View
biology/unanimity/Makefile
| # $FreeBSD$ | # $FreeBSD$ | ||||
| PORTNAME= unanimity | PORTNAME= unanimity | ||||
| DISTVERSION= g20180307 | DISTVERSIONPREFIX= v | ||||
| PORTREVISION= 1 | DISTVERSION= 3.1.0 | ||||
| CATEGORIES= biology | CATEGORIES= biology | ||||
| MAINTAINER= jwb@FreeBSD.org | MAINTAINER= jwb@FreeBSD.org | ||||
| COMMENT= Pacific Biosciences consensus library and applications | COMMENT= Pacific Biosciences consensus library and applications | ||||
| LICENSE= BSD3CLAUSE | LICENSE= BSD3CLAUSE | ||||
| LICENSE_FILE= ${WRKSRC}/LICENSE | LICENSE_FILE= ${WRKSRC}/LICENSE | ||||
| BROKEN_aarch64= fails to compile: mmintrin.h:47:5: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'? | BROKEN_aarch64= fails to compile: mmintrin.h:47:5: use of undeclared identifier '__builtin_ia32_emms'; did you mean '__builtin_isless'? | ||||
| # Sensitive to dependency versions, use latest commit for everything | # Sensitive to dependency versions, use latest commit for everything | ||||
| BUILD_DEPENDS= pbseqan==g20171002:biology/pbseqan \ | BUILD_DEPENDS= pbseqan>=g20171002:biology/pbseqan \ | ||||
| pbbam==g20180416:biology/pbbam \ | pbbam>=g20180416:biology/pbbam \ | ||||
| pbcopper==g20180413:biology/pbcopper | pbcopper>=g20180413:biology/pbcopper | ||||
| LIB_DEPENDS= libhts.so:biology/htslib \ | LIB_DEPENDS= libhts.so:biology/htslib \ | ||||
| libboost_regex.so:devel/boost-libs | libboost_regex.so:devel/boost-libs | ||||
| USES= cmake pkgconfig python | USES= cmake pkgconfig python | ||||
| USE_GITHUB= yes | USE_GITHUB= yes | ||||
| GH_ACCOUNT= PacificBiosciences | GH_ACCOUNT= PacificBiosciences | ||||
| GH_TAGNAME= 6f11a13e1472b8c00337ba8c5e94bf83bdab31d6 | |||||
| CMAKE_ARGS+= -DHTSLIB_INCLUDE_DIRS:STRING=${LOCALBASE}/include/htslib \ | CMAKE_ARGS+= -DHTSLIB_INCLUDE_DIRS:STRING=${LOCALBASE}/include/htslib \ | ||||
| -DHTSLIB_LIBRARIES:STRING="-L${LOCALBASE}/lib -lhts" \ | -DHTSLIB_LIBRARIES:STRING="-L${LOCALBASE}/lib -lhts" \ | ||||
| -DPacBioBAM_INCLUDE_DIRS:STRING=${LOCALBASE}/include/pbbam \ | -DPacBioBAM_INCLUDE_DIRS:STRING=${LOCALBASE}/include/pbbam \ | ||||
| -DPacBioBAM_LIBRARIES:STRING="-L${LOCALBASE}/lib -lpbbam" \ | -DPacBioBAM_LIBRARIES:STRING="-L${LOCALBASE}/lib -lpbbam" \ | ||||
| -DSEQAN_INCLUDE_DIRS:STRING=${LOCALBASE}/include/PacBio \ | -DSEQAN_INCLUDE_DIRS:STRING=${LOCALBASE}/include/PacBio \ | ||||
| -Dpbcopper_INCLUDE_DIRS=${LOCALBASE}/include \ | -Dpbcopper_INCLUDE_DIRS=${LOCALBASE}/include \ | ||||
| -Dpbcopper_LIBRARIES="-L${LOCALBASE}/lib -lpbcopper" | -Dpbcopper_LIBRARIES="-L${LOCALBASE}/lib -lpbcopper" | ||||
| Show All 9 Lines | |||||