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head/biology/samtools/Makefile
# Created by: Reed A. Cartwright <cartwright@asu.edu> | # Created by: Reed A. Cartwright <cartwright@asu.edu> | ||||
# $FreeBSD$ | # $FreeBSD$ | ||||
PORTNAME= samtools | PORTNAME= samtools | ||||
PORTVERSION= 1.6 | DISTVERSION= 1.9 | ||||
CATEGORIES= biology | CATEGORIES= biology | ||||
MAINTAINER= cartwright@asu.edu | MAINTAINER= cartwright@asu.edu | ||||
COMMENT= Tools for manipulating next-generation sequencing data | COMMENT= Tools for manipulating next-generation sequencing data | ||||
LICENSE= MIT | LICENSE= MIT | ||||
LICENSE_FILE= ${WRKSRC}/LICENSE | LICENSE_FILE= ${WRKSRC}/LICENSE | ||||
BUILD_DEPENDS= htslib>=1.6:biology/htslib | BUILD_DEPENDS= htslib>=1.6:biology/htslib | ||||
LIB_DEPENDS= libhts.so:biology/htslib | LIB_DEPENDS= libhts.so:biology/htslib | ||||
TEST_DEPENDS= bash:shells/bash | TEST_DEPENDS= bash:shells/bash | ||||
USES= autoreconf gmake localbase ncurses \ | |||||
perl5 python:env shebangfix | |||||
USE_GITHUB= yes | USE_GITHUB= yes | ||||
USES= autoreconf gmake ncurses perl5 python:env shebangfix | |||||
USE_PERL5= test | USE_PERL5= test | ||||
GNU_CONFIGURE= yes | GNU_CONFIGURE= yes | ||||
SUB_FILES= pkg-message | SUB_FILES= pkg-message | ||||
SHEBANG_FILES= misc/*.pl misc/*.py misc/plot-bamstats test/test.pl | SHEBANG_FILES= misc/*.pl misc/*.py misc/plot-bamstats test/test.pl | ||||
CPPFLAGS+= -I${LOCALBASE}/include | |||||
LDFLAGS+= -L${LOCALBASE}/lib | |||||
TEST_TARGET= test | TEST_TARGET= test | ||||
.include <bsd.port.mk> | .include <bsd.port.mk> |