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	# Created by: Reed A. Cartwright <cartwright@asu.edu>			# Created by: Reed A. Cartwright <cartwright@asu.edu>
	# $FreeBSD$			# $FreeBSD$

	PORTNAME= samtools			PORTNAME= samtools
	PORTVERSION= 1.6			DISTVERSION= 1.9
	CATEGORIES= biology			CATEGORIES= biology

	MAINTAINER= cartwright@asu.edu			MAINTAINER= cartwright@asu.edu
	COMMENT= Tools for manipulating next-generation sequencing data			COMMENT= Tools for manipulating next-generation sequencing data

	LICENSE= MIT			LICENSE= MIT
	LICENSE_FILE= ${WRKSRC}/LICENSE			LICENSE_FILE= ${WRKSRC}/LICENSE

	BUILD_DEPENDS= htslib>=1.6:biology/htslib			BUILD_DEPENDS= htslib>=1.6:biology/htslib
	LIB_DEPENDS= libhts.so:biology/htslib			LIB_DEPENDS= libhts.so:biology/htslib
	TEST_DEPENDS= bash:shells/bash			TEST_DEPENDS= bash:shells/bash

				USES= autoreconf gmake ncurses \
				perl5 python:env shebangfix

	USE_GITHUB= yes			USE_GITHUB= yes

	USES= autoreconf gmake ncurses perl5 python:env shebangfix
	USE_PERL5= test			USE_PERL5= test
	GNU_CONFIGURE= yes			GNU_CONFIGURE= yes
	SUB_FILES= pkg-message			SUB_FILES= pkg-message
	SHEBANG_FILES= misc/.pl misc/.py misc/plot-bamstats test/test.pl			SHEBANG_FILES= misc/.pl misc/.py misc/plot-bamstats test/test.pl

	CPPFLAGS+= -I${LOCALBASE}/include			CPPFLAGS+= -I${LOCALBASE}/include
				tcbernerUnsubmitted Done Inline Actions ^these two lines can be replaces by USES=localbase tcberner: ^these two lines can be replaces by USES=localbase
	LDFLAGS+= -L${LOCALBASE}/lib			LDFLAGS+= -L${LOCALBASE}/lib

	TEST_TARGET= test			TEST_TARGET= test

	.include <bsd.port.mk>			.include <bsd.port.mk>