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head/biology/tabixpp/files/Makefile
| Property | Old Value | New Value |
|---|---|---|
| fbsd:nokeywords | null | yes \ No newline at end of property |
| svn:eol-style | null | native \ No newline at end of property |
| svn:mime-type | null | text/plain \ No newline at end of property |
| # Use ?= to allow overriding from the env or command-line, e.g. | |||||
| # | |||||
| # make CXXFLAGS="-O3 -fPIC" install | |||||
| # | |||||
| # Package managers will override many of these variables automatically, so | |||||
| # this is aimed at making it easy to create packages (Debian packages, | |||||
| # FreeBSD ports, MacPorts, pkgsrc, etc.) | |||||
| CC ?= cc | |||||
| CXX ?= c++ | |||||
| CXXFLAGS ?= -g -Wall -O2 #-m64 #-arch ppc | |||||
| CXXFLAGS += -fPIC | |||||
| INCLUDES ?= -Ihtslib | |||||
| HTS_HEADERS ?= htslib/htslib/bgzf.h htslib/htslib/tbx.h | |||||
| HTS_LIB ?= htslib/libhts.a | |||||
| LDFLAGS ?= -Lhtslib | |||||
| LDFLAGS += -L. | |||||
| DESTDIR ?= stage | |||||
| PREFIX ?= /usr/local | |||||
| STRIP ?= strip | |||||
| INSTALL ?= install -c | |||||
| MKDIR ?= mkdir -p | |||||
| AR ?= ar | |||||
| DFLAGS = -D_FILE_OFFSET_BITS=64 -D_USE_KNETFILE | |||||
| BIN = tabix++ | |||||
| LIB = libtabix.a | |||||
| SOVERSION = 1 | |||||
| SLIB = libtabix.so.$(SOVERSION) | |||||
| OBJS = tabix.o | |||||
| SUBDIRS = . | |||||
| .SUFFIXES:.c .o | |||||
| .c.o: | |||||
| $(CC) -c $(CXXFLAGS) $(DFLAGS) $(INCLUDES) $< -o $@ | |||||
| all-recur lib-recur clean-recur cleanlocal-recur install-recur: | |||||
| @target=`echo $@ | sed s/-recur//`; \ | |||||
| wdir=`pwd`; \ | |||||
| list='$(SUBDIRS)'; for subdir in $$list; do \ | |||||
| cd $$subdir; \ | |||||
| $(MAKE) CC="$(CC)" DFLAGS="$(DFLAGS)" CXXFLAGS="$(CXXFLAGS)" \ | |||||
| INCLUDES="$(INCLUDES)" LDFLAGS="$(LDFLAGS)" $$target \ | |||||
| || exit 1; \ | |||||
| cd $$wdir; \ | |||||
| done; | |||||
| all: $(BIN) $(LIB) $(SLIB) | |||||
| tabix.o: $(HTS_HEADERS) tabix.cpp tabix.hpp | |||||
| $(CXX) $(CXXFLAGS) -c tabix.cpp $(INCLUDES) | |||||
| htslib/libhts.a: | |||||
| cd htslib && $(MAKE) lib-static | |||||
| $(LIB): $(OBJS) | |||||
| $(AR) rs $(LIB) $(OBJS) | |||||
| $(SLIB): $(OBJS) | |||||
| $(CXX) -shared -Wl,-soname,$(SLIB) -o $(SLIB) $(OBJS) | |||||
| tabix++: $(OBJS) main.cpp $(HTS_LIB) | |||||
| $(CXX) $(CXXFLAGS) -o $@ main.cpp $(OBJS) $(INCLUDES) $(LDFLAGS) \ | |||||
| -lhts -lpthread -lm -lz | |||||
| install: all | |||||
| $(MKDIR) $(DESTDIR)$(PREFIX)/bin | |||||
| $(MKDIR) $(DESTDIR)$(PREFIX)/include | |||||
| $(MKDIR) $(DESTDIR)$(PREFIX)/lib | |||||
| $(INSTALL) $(BIN) $(DESTDIR)$(PREFIX)/bin | |||||
| $(INSTALL) *.hpp $(DESTDIR)$(PREFIX)/include | |||||
| $(INSTALL) $(LIB) $(SLIB) $(DESTDIR)$(PREFIX)/lib | |||||
| install-strip: install | |||||
| $(STRIP) $(DESTDIR)$(PREFIX)/bin/$(BIN) $(DESTDIR)$(PREFIX)/lib/$(SLIB) | |||||
| cleanlocal: | |||||
| rm -rf $(BIN) $(LIB) $(SLIB) $(OBJS) $(DESTDIR) | |||||
| rm -fr gmon.out *.o a.out *.dSYM $(BIN) *~ *.a tabix.aux tabix.log \ | |||||
| tabix.pdf *.class libtabix.*.dylib | |||||
| cd htslib && $(MAKE) clean | |||||
| clean: cleanlocal-recur | |||||