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				# $FreeBSD$

				PORTNAME= TrimGalore
				DISTVERSION= 0.4.5
				CATEGORIES= biology perl5
				PKGNAMEPREFIX= p5-

				MAINTAINER= jwb@FreeBSD.org
				COMMENT= Wrapper around Cutadapt and FastQC for adapter and quality trimming

				LICENSE= GPLv3
				LICENSE_FILE= ${WRKSRC}/LICENSE

				RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cutadapt>0:biology/py-cutadapt@${PY_FLAVOR} \
				fastqc>0:biology/fastqc

				NO_ARCH= yes
				NO_BUILD= yes

				USES= perl5 python:env shebangfix
				SHEBANG_FILES= trim_galore
				USE_PERL5= run

				USE_GITHUB= yes
				GH_ACCOUNT= FelixKrueger

				do-install:
				${INSTALL_SCRIPT} ${WRKSRC}/trim_galore ${STAGEDIR}${PREFIX}/bin
				cd ${WRKSRC} && ${COPYTREE_SHARE} test_files ${STAGEDIR}${DATADIR}

				.include <bsd.port.mk>