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head/biology/bcftools/Makefile
| # Created by: Reed A. Cartwright <cartwright@asu.edu> | # Created by: Reed A. Cartwright <cartwright@asu.edu> | ||||
| # $FreeBSD$ | # $FreeBSD$ | ||||
| PORTNAME= bcftools | PORTNAME= bcftools | ||||
| PORTVERSION= 1.3.1 | PORTVERSION= 1.6 | ||||
| PORTREVISION= 2 | |||||
| CATEGORIES= biology | CATEGORIES= biology | ||||
| MAINTAINER= cartwright@asu.edu | MAINTAINER= cartwright@asu.edu | ||||
| COMMENT= Tools for manipulating next-generation sequencing data | COMMENT= Tools for manipulating next-generation sequencing data | ||||
| LICENSE= MIT | LICENSE= MIT | ||||
| # LICENSE_FILE= ${WRKSRC}/LICENSE | # LICENSE_FILE= ${WRKSRC}/LICENSE | ||||
| BUILD_DEPENDS= htslib>=1.3:biology/htslib | BUILD_DEPENDS= htslib>=1.6:biology/htslib | ||||
| LIB_DEPENDS= libhts.so:biology/htslib | LIB_DEPENDS= libhts.so:biology/htslib | ||||
| TEST_DEPENDS= bash:shells/bash | TEST_DEPENDS= bash:shells/bash | ||||
| CONFLICTS_BUILD=openssl | CONFLICTS_BUILD=openssl | ||||
| USE_GITHUB= yes | USE_GITHUB= yes | ||||
| GH_ACCOUNT= samtools | GH_ACCOUNT= samtools | ||||
| USES= gmake perl5 shebangfix | USES= autoreconf gmake perl5 python shebangfix | ||||
| USE_PERL5= test | USE_PERL5= test | ||||
| PYTHON_NO_DEPENDS= yes | |||||
| GNU_CONFIGURE= yes | |||||
| SUB_FILES= pkg-message | SUB_FILES= pkg-message | ||||
| SHEBANG_FILES= vcfutils.pl plot-vcfstats plugins/color-chrs.pl test/test.pl | SHEBANG_FILES= misc/* test/test.pl | ||||
| OPTIONS_DEFINE= GPL | OPTIONS_DEFINE= GPL | ||||
| GPL_DESC= Enable modules that rely on GPL code | GPL_DESC= Enable modules that rely on GPL code | ||||
| OPTIONS_DEFAULT= GPL | OPTIONS_DEFAULT= GPL | ||||
| GPL_LIB_DEPENDS= libgsl.so:math/gsl | GPL_LIB_DEPENDS= libgsl.so:math/gsl | ||||
| .include <bsd.port.options.mk> | .include <bsd.port.options.mk> | ||||
| CPPFLAGS+= -I${LOCALBASE}/include | CPPFLAGS+= -I${LOCALBASE}/include | ||||
| LDFLAGS+= -L${LOCALBASE}/lib | LDFLAGS+= -L${LOCALBASE}/lib | ||||
| MAKE_ENV= INSTALL_LIB="${INSTALL_LIB}" \ | |||||
| INSTALL_DATA="${INSTALL_DATA}" \ | |||||
| INSTALL_PROGRAM="${INSTALL_PROGRAM}" \ | |||||
| INSTALL_SCRIPT="${INSTALL_SCRIPT}" \ | |||||
| INSTALL_DIR="${MKDIR}" | |||||
| .if ${PORT_OPTIONS:MGPL} | .if ${PORT_OPTIONS:MGPL} | ||||
| MAKE_ENV+= USE_GPL=1 | MAKE_ENV+= USE_GPL=1 | ||||
| LICENSE= GPLv3 | LICENSE= GPLv3 | ||||
| .endif | .endif | ||||
| PLIST_SUB= PORTVERSION="${PORTVERSION}" | |||||
| TEST_TARGET= test | TEST_TARGET= test | ||||
| post-patch: | |||||
| @${GREP} -q '@PORTVERSION@' ${WRKSRC}/configure.ac || (echo "@PORTVERSION@ in file/patch-configure.ac is overwritten probably due to using 'make makepatch'"; exit 1) | |||||
| @${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' ${WRKSRC}/configure.ac | |||||
| .include <bsd.port.mk> | .include <bsd.port.mk> | ||||