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head/biology/bowtie2/Makefile
| # Created by: Jason Bacon | # Created by: Jason Bacon | ||||
| # $FreeBSD$ | # $FreeBSD$ | ||||
| PORTNAME= bowtie2 | PORTNAME= bowtie2 | ||||
| PORTVERSION= 2.2.8 | PORTVERSION= 2.2.9 | ||||
| DISTVERSIONPREFIX= v | DISTVERSIONPREFIX= v | ||||
| CATEGORIES= biology | CATEGORIES= biology | ||||
| MAINTAINER= bacon4000@gmail.com | MAINTAINER= bacon4000@gmail.com | ||||
| COMMENT= Ultrafast, memory-efficient short read aligner | COMMENT= Ultrafast, memory-efficient short read aligner | ||||
| LICENSE= GPLv3 | LICENSE= GPLv3+ | ||||
| LICENSE_FILE= ${WRKSRC}/LICENSE | |||||
| # May also work on other 64-bit platforms, but untested | # May also work on other 64-bit platforms, but untested | ||||
| ONLY_FOR_ARCHS= amd64 | ONLY_FOR_ARCHS= amd64 | ||||
| USES= gmake perl5 shebangfix | USES= gmake perl5 python shebangfix | ||||
| USE_PERL5= run | USE_PERL5= run | ||||
| SHEBANG_FILES= scripts/*.pl | SHEBANG_FILES= bowtie2-build bowtie2-inspect scripts/*.pl | ||||
| USE_GITHUB= yes | USE_GITHUB= yes | ||||
| GH_ACCOUNT= BenLangmead | GH_ACCOUNT= BenLangmead | ||||
| OPTIONS_DEFINE= DOCS EXAMPLES | |||||
| post-install: | post-install: | ||||
| ${MKDIR} ${STAGEDIR}${DATADIR}/scripts | ${MKDIR} ${STAGEDIR}${DATADIR}/scripts | ||||
| ${INSTALL_PROGRAM} \ | ${INSTALL_PROGRAM} \ | ||||
| ${WRKSRC}/bowtie2*-s \ | ${WRKSRC}/bowtie2*-s \ | ||||
| ${WRKSRC}/bowtie2*-l \ | ${WRKSRC}/bowtie2*-l \ | ||||
| ${STAGEDIR}${PREFIX}/bin | ${STAGEDIR}${PREFIX}/bin | ||||
| ${INSTALL_SCRIPT} \ | ${INSTALL_SCRIPT} \ | ||||
| ${WRKSRC}/scripts/*.sh \ | ${WRKSRC}/scripts/*.sh \ | ||||
| ${WRKSRC}/scripts/*.pl \ | ${WRKSRC}/scripts/*.pl \ | ||||
| ${STAGEDIR}${DATADIR}/scripts | ${STAGEDIR}${DATADIR}/scripts | ||||
| cd ${WRKSRC}/example && ${COPYTREE_SHARE} \ | |||||
| 'index reads reference' \ | post-install-DOCS-on: | ||||
| ${STAGEDIR}${EXAMPLESDIR} | (cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) | ||||
| cd ${WRKSRC}/doc && ${COPYTREE_SHARE} \ | |||||
| \* \ | post-install-EXAMPLES-on: | ||||
| ${STAGEDIR}${DOCSDIR} | (cd ${WRKSRC}/example && ${COPYTREE_SHARE} . ${STAGEDIR}${EXAMPLESDIR}) | ||||
| .include <bsd.port.mk> | .include <bsd.port.mk> | ||||