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	PORTNAME= bwa			PORTNAME= bwa
	DISTVERSIONPREFIX= v			DISTVERSIONPREFIX= v
	DISTVERSION= 0.7.19			DISTVERSION= 0.7.19
	CATEGORIES= biology			CATEGORIES= biology

	MAINTAINER= alven@FreeBSD.org			MAINTAINER= alven@FreeBSD.org
	COMMENT= Burrows-Wheeler sequence aligner			COMMENT= Burrows-Wheeler sequence aligner
	WWW= https://bio-bwa.sourceforge.net/ \			WWW= https://bio-bwa.sourceforge.net/ \
	https://sourceforge.net/projects/bio-bwa/ \			https://sourceforge.net/projects/bio-bwa/ \
	https://github.com/lh3/bwa/			https://github.com/lh3/bwa/

	LICENSE= GPLv3			LICENSE= GPLv3
	LICENSE_FILE= ${WRKSRC}/COPYING			LICENSE_FILE= ${WRKSRC}/COPYING

	# Recheck these after 0.7.18 update
	BROKEN_mips= fails to compile: cc1: unrecognized command line option "-msse2"
	BROKEN_mips64= fails to compile: cc1: unrecognized command line option "-msse2"

	BUILD_DEPENDS= simde>0:devel/simde			BUILD_DEPENDS= simde>0:devel/simde

	USES= gmake localbase perl5 shebangfix			USES= gmake localbase perl5 shebangfix
	USE_GITHUB= yes			USE_GITHUB= yes
	GH_ACCOUNT= lh3			GH_ACCOUNT= lh3
	USE_PERL5= run			USE_PERL5= run

	SHEBANG_FILES= qualfa2fq.pl xa2multi.pl			SHEBANG_FILES= qualfa2fq.pl xa2multi.pl
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