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	PORTNAME= pysam			PORTNAME= pysam
	DISTVERSION= 0.20.0			DISTVERSION= 0.20.0
				PORTREVISION= 1
	CATEGORIES= biology python			CATEGORIES= biology python
	MASTER_SITES= PYPI			MASTER_SITES= PYPI
	PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}			PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}

	MAINTAINER= yuri@FreeBSD.org			MAINTAINER= yuri@FreeBSD.org
	COMMENT= Python module for reading, manipulating and writing genomic data sets			COMMENT= Python module for reading, manipulating and writing genomic data sets
	WWW= https://github.com/pysam-developers/pysam			WWW= https://github.com/pysam-developers/pysam

	LICENSE= MIT			LICENSE= MIT
	LICENSE_FILE= ${WRKSRC}/COPYING			LICENSE_FILE= ${WRKSRC}/COPYING

				LIB_DEPENDS= libhts.so:biology/htslib

	USES= gmake python:3.6-3.9			USES= gmake python:3.6-3.9
	USE_PYTHON= autoplist distutils cython cython_run pytest			USE_PYTHON= autoplist distutils cython cython_run pytest

	CFLAGS+= -fPIC # workaround for https://github.com/pysam-developers/pysam/issues/1146

	BINARY_ALIAS= make=${GMAKE}			BINARY_ALIAS= make=${GMAKE}
				MAKE_ENV= HTSLIB_MODE=external \
				HTSLIB_LIBRARY_DIR=${LOCALBASE}/lib \
				HTSLIB_INCLUDE_DIR=${LOCALBASE}/include

	post-install:			post-install:
	@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysam/lib*${PYTHON_EXT_SUFFIX}.so			@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysam/lib*${PYTHON_EXT_SUFFIX}.so

	.include <bsd.port.mk>			.include <bsd.port.mk>