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biology/cufflinks/files/patch-src_codons.cpp
- This file was added.
--- src/codons.cpp.orig 2022-07-28 03:23:12 UTC | |||||
+++ src/codons.cpp | |||||
@@ -48,9 +48,9 @@ static bool isCodonTableReady=codonTableInit(); | |||||
unsigned short packCodon(char n1, char n2, char n3) { | |||||
//assumes they are uppercase already! | |||||
- byte b1=n1-'A'; | |||||
- byte b2=n2-'A'; | |||||
- byte b3=n3-'A'; | |||||
+ bytex b1=n1-'A'; | |||||
+ bytex b2=n2-'A'; | |||||
+ bytex b3=n3-'A'; | |||||
b1 |= (b2 << 5); | |||||
b2 = (b2 >> 3) | (b3 << 2); | |||||
return ( ((unsigned short)b2) << 8) + b1; | |||||
@@ -68,7 +68,7 @@ bool codonTableInit() { | |||||
char Codon::translate() { | |||||
- for (byte i=0;i<3;i++) nuc[i]=toupper(nuc[i]); | |||||
+ for (bytex i=0;i<3;i++) nuc[i]=toupper(nuc[i]); | |||||
unsigned short aacode=packCodon(nuc[0], nuc[1], nuc[2]); | |||||
return codonTable[aacode]; | |||||
} |