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biology/cufflinks/files/patch-configure.ac
| Show All 17 Lines | |||||
| - [ext_CFLAGS="-D_FILE_OFFSET_BITS=64"; AC_MSG_RESULT([no])]);; | - [ext_CFLAGS="-D_FILE_OFFSET_BITS=64"; AC_MSG_RESULT([no])]);; | ||||
| + #CFLAGS="-m64" | + #CFLAGS="-m64" | ||||
| + CFLAGS="-D_FILE_OFFSET_BITS=64" | + CFLAGS="-D_FILE_OFFSET_BITS=64" | ||||
| +# AC_COMPILE_IFELSE([AC_LANG_PROGRAM], [ext_CFLAGS="-m64"; AC_MSG_RESULT([yes])], | +# AC_COMPILE_IFELSE([AC_LANG_PROGRAM], [ext_CFLAGS="-m64"; AC_MSG_RESULT([yes])], | ||||
| +# [ext_CFLAGS="-D_FILE_OFFSET_BITS=64"; AC_MSG_RESULT([no])]);; | +# [ext_CFLAGS="-D_FILE_OFFSET_BITS=64"; AC_MSG_RESULT([no])]);; | ||||
| esac | esac | ||||
| AC_ARG_ENABLE(vectorize, [ --enable-vectorize Enable GCC auto-vectorization], | AC_ARG_ENABLE(vectorize, [ --enable-vectorize Enable GCC auto-vectorization], | ||||
| @@ -111,7 +112,7 @@ AC_ARG_ENABLE(profiling, [ --enable-profiling | |||||
| [ext_LDFLAGS="-lprofiler -ltcmalloc"], []) | |||||
| CFLAGS="${generic_CFLAGS} ${ext_CFLAGS} ${user_CFLAGS} ${debug_CFLAGS} ${OPENMP_CFLAGS}" | |||||
| -CXXFLAGS="$CFLAGS -std=c++03" | |||||
| +CXXFLAGS="$CFLAGS -std=c++14" | |||||
| CXXFLAGS="${CXXFLAGS} ${BOOST_CPPFLAGS} ${BAM_CPPFLAGS} ${EIGEN_CPPFLAGS}" | |||||
| user_LDFLAGS="$LDFLAGS" | |||||
| LDFLAGS="${ext_LDFLAGS} ${user_LDFLAGS}" | |||||
| @@ -120,7 +121,6 @@ LDFLAGS="${ext_LDFLAGS} ${user_LDFLAGS}" | @@ -120,7 +121,6 @@ LDFLAGS="${ext_LDFLAGS} ${user_LDFLAGS}" | ||||
| AC_CHECK_MEMBERS([struct sysinfo.totalram], [], [], [#include <sys/sysinfo.h>]) | AC_CHECK_MEMBERS([struct sysinfo.totalram], [], [], [#include <sys/sysinfo.h>]) | ||||
| AC_CHECK_DECLS([sysctl, CTL_HW, HW_PHYSMEM], [], [], [#include <sys/sysctl.h>]) | AC_CHECK_DECLS([sysctl, CTL_HW, HW_PHYSMEM], [], [], [#include <sys/sysctl.h>]) | ||||
| -AM_INIT_AUTOMAKE([-Wall tar-pax foreign]) | -AM_INIT_AUTOMAKE([-Wall tar-pax foreign]) | ||||
| AC_CONFIG_FILES([Makefile | AC_CONFIG_FILES([Makefile | ||||
| src/Makefile]) | src/Makefile]) | ||||