diff --git a/biology/py-ont-fast5-api/Makefile b/biology/py-ont-fast5-api/Makefile index d998d68a0e04..79879d97e612 100644 --- a/biology/py-ont-fast5-api/Makefile +++ b/biology/py-ont-fast5-api/Makefile @@ -1,42 +1,42 @@ PORTNAME= ont-fast5-api DISTVERSIONPREFIX= release_ -DISTVERSION= 4.0.0 +DISTVERSION= 4.0.2 CATEGORIES= biology python PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} MAINTAINER= jwb@FreeBSD.org COMMENT= Interface to HDF5 files in Oxford Nanopore .fast5 format LICENSE= MPL20 LICENSE_FILE= ${WRKSRC}/LICENSE.md LIB_DEPENDS= libvbz_hdf_plugin.so:archivers/vbz-compression RUN_DEPENDS= ${PYNUMPY} \ ${PYTHON_PKGNAMEPREFIX}h5py>=2.2.0:science/py-h5py@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}six>0:devel/py-six@${PY_FLAVOR} \ ${PYTHON_PKGNAMEPREFIX}progressbar>0:misc/py-progressbar@${PY_FLAVOR} TEST_DEPENDS= ${PYTHON_PKGNAMEPREFIX}pip>=0:devel/py-pip@${PY_FLAVOR} USES= python -USE_PYTHON= autoplist distutils +USE_PYTHON= autoplist concurrent distutils USE_GITHUB= yes GH_ACCOUNT= nanoporetech GH_PROJECT= ont_fast5_api NO_ARCH= yes NO_BUILD= yes post-patch: ${RM} ${WRKSRC}/ont_fast5_api/vbz_plugin/* pre-configure: @${REINPLACE_CMD} -e 's|progressbar33|progressbar|g' \ ${WRKSRC}/setup.py \ ${WRKSRC}/README.rst \ ${WRKSRC}/ont_fast5_api/conversion_tools/conversion_utils.py do-test: @cd ${WRKSRC} && ${PYTHON_CMD} ${PYDISTUTILS_SETUP} test .include diff --git a/biology/py-ont-fast5-api/distinfo b/biology/py-ont-fast5-api/distinfo index 9156cd8912ef..d6298ee5ba57 100644 --- a/biology/py-ont-fast5-api/distinfo +++ b/biology/py-ont-fast5-api/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1628770827 -SHA256 (nanoporetech-ont_fast5_api-release_4.0.0_GH0.tar.gz) = 7f9b3fa0f814ff38c30e9cb21971ec61e2b3fd52fb166a8404c21bf25679e0ab -SIZE (nanoporetech-ont_fast5_api-release_4.0.0_GH0.tar.gz) = 4081125 +TIMESTAMP = 1648128656 +SHA256 (nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz) = c078dc0d20b02cd9807105415f259e099f1adc8b922d67a1a9fe04321c098361 +SIZE (nanoporetech-ont_fast5_api-release_4.0.2_GH0.tar.gz) = 4082466 diff --git a/biology/py-ont-fast5-api/files/patch-setup.py b/biology/py-ont-fast5-api/files/patch-setup.py new file mode 100644 index 000000000000..a29c7326d3b5 --- /dev/null +++ b/biology/py-ont-fast5-api/files/patch-setup.py @@ -0,0 +1,11 @@ +--- setup.py.orig 2022-03-25 16:23:32 UTC ++++ setup.py +@@ -35,7 +35,7 @@ setup(name=__pkg_name__.replace("_", "-"), + version=get_version(), + url='https://github.com/nanoporetech/{}'.format(__pkg_name__), + install_requires=installation_requirements, +- packages=find_packages(), ++ packages=find_packages(exclude=['test']), + package_data={__pkg_name__: ['vbz_plugin/*.so', 'vbz_plugin/*.dylib', 'vbz_plugin/*.dll']}, + python_requires='>=3.6', + entry_points={'console_scripts': [