diff --git a/science/Makefile b/science/Makefile index 00f49e72bc6e..a670fb648dff 100644 --- a/science/Makefile +++ b/science/Makefile @@ -1,379 +1,380 @@ COMMENT = Scientific ports SUBDIR += 2d-rewriter SUBDIR += ALPSCore SUBDIR += InsightToolkit SUBDIR += PETSc SUBDIR += R-cran-AMORE SUBDIR += R-cran-DCluster SUBDIR += R-cran-Epi SUBDIR += R-cran-FAdist SUBDIR += R-cran-bayesm SUBDIR += R-cran-cmprsk SUBDIR += R-cran-e1071 SUBDIR += R-cran-eco SUBDIR += R-cran-epicalc SUBDIR += R-cran-etm SUBDIR += R-cran-fastICA SUBDIR += R-cran-kernlab SUBDIR += R-cran-snow SUBDIR += R-cran-som SUBDIR += R-cran-udunits2 SUBDIR += abinit SUBDIR += afni SUBDIR += agrum SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += apbs SUBDIR += atompaw SUBDIR += avogadro2 SUBDIR += avogadrolibs SUBDIR += axom SUBDIR += bagel SUBDIR += bddsolve SUBDIR += berkeleygw SUBDIR += bodr SUBDIR += buddy SUBDIR += cdcl SUBDIR += cdf SUBDIR += cdk SUBDIR += cdo SUBDIR += cgnslib SUBDIR += cgribex SUBDIR += checkmol SUBDIR += chemical-mime-data SUBDIR += chemps2 SUBDIR += chemtool SUBDIR += chemtool-devel SUBDIR += chrono SUBDIR += clhep SUBDIR += clipper SUBDIR += code_saturne SUBDIR += colt SUBDIR += conduit SUBDIR += coordgenlibs SUBDIR += cp2k SUBDIR += cp2k-data SUBDIR += crf++ SUBDIR += csvtk SUBDIR += dakota SUBDIR += dalton SUBDIR += dcl SUBDIR += devisor SUBDIR += dftbplus SUBDIR += dkh SUBDIR += dlib-cpp SUBDIR += drawxtl SUBDIR += dvc SUBDIR += dynare SUBDIR += eccodes SUBDIR += elk SUBDIR += elmerfem SUBDIR += epte SUBDIR += erd SUBDIR += ergo SUBDIR += erkale SUBDIR += erkale-pseudopotentials SUBDIR += fastcap SUBDIR += fasthenry SUBDIR += fastjet SUBDIR += fisicalab SUBDIR += frontistr SUBDIR += fsom SUBDIR += fvcom SUBDIR += fvcom-mpi SUBDIR += gabedit SUBDIR += gamess-us SUBDIR += gchemutils SUBDIR += gdma SUBDIR += getdp SUBDIR += ghemical SUBDIR += ghmm SUBDIR += gnudatalanguage SUBDIR += gpaw-setups SUBDIR += gramps SUBDIR += grib_api SUBDIR += gromacs SUBDIR += gsmc SUBDIR += gtamsanalyzer SUBDIR += h5utils SUBDIR += h5z-zfp SUBDIR += harminv SUBDIR += hdf SUBDIR += hdf5 SUBDIR += hdf5-18 SUBDIR += healpix SUBDIR += hepmc3 SUBDIR += highfive SUBDIR += hypre SUBDIR += iboview SUBDIR += isaac-cfd SUBDIR += jdftx SUBDIR += jmol SUBDIR += jstrack SUBDIR += kalzium SUBDIR += kim-api SUBDIR += kst2 SUBDIR += lammps SUBDIR += lamprop SUBDIR += latte SUBDIR += libaec SUBDIR += libccp4 SUBDIR += libcint SUBDIR += libctl SUBDIR += libecpint SUBDIR += libefp SUBDIR += libgeodecomp SUBDIR += libghemical SUBDIR += libgridxc SUBDIR += libint SUBDIR += libint2 SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmsym SUBDIR += liboglappth SUBDIR += libquantum SUBDIR += libssm SUBDIR += libsvm SUBDIR += libsvm-python SUBDIR += libvdwxc SUBDIR += libxc SUBDIR += liggghts SUBDIR += luscus SUBDIR += madness SUBDIR += maeparser SUBDIR += massxpert SUBDIR += mbdyn SUBDIR += mcstas SUBDIR += mcstas-comps SUBDIR += mcxtrace SUBDIR += mcxtrace-comps SUBDIR += mdynamix SUBDIR += medit SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += mmdb2 SUBDIR += mmtf-cpp SUBDIR += mol2ps SUBDIR += molgif SUBDIR += molscript SUBDIR += molsketch SUBDIR += mpb SUBDIR += mpqc SUBDIR += msms SUBDIR += multiwfn SUBDIR += namd SUBDIR += nest SUBDIR += netcdf SUBDIR += netcdf-cxx SUBDIR += netcdf-fortran SUBDIR += nifticlib SUBDIR += nwchem SUBDIR += nwchem-data SUBDIR += octopus SUBDIR += openbabel + SUBDIR += openems SUBDIR += openkim SUBDIR += openkim-models SUBDIR += openmx SUBDIR += opensim-core SUBDIR += opensph SUBDIR += opsin SUBDIR += orthanc SUBDIR += orthanc-dicomweb SUBDIR += orthanc-mysql SUBDIR += orthanc-postgresql SUBDIR += orthanc-webviewer SUBDIR += p5-Algorithm-SVMLight SUBDIR += p5-Chemistry-3DBuilder SUBDIR += p5-Chemistry-Bond-Find SUBDIR += p5-Chemistry-Canonicalize SUBDIR += p5-Chemistry-Elements SUBDIR += p5-Chemistry-File-MDLMol SUBDIR += p5-Chemistry-File-Mopac SUBDIR += p5-Chemistry-File-PDB SUBDIR += p5-Chemistry-File-SLN SUBDIR += p5-Chemistry-File-SMARTS SUBDIR += p5-Chemistry-File-SMILES SUBDIR += p5-Chemistry-File-VRML SUBDIR += p5-Chemistry-File-XYZ SUBDIR += p5-Chemistry-FormulaPattern SUBDIR += p5-Chemistry-InternalCoords SUBDIR += p5-Chemistry-Isotope SUBDIR += p5-Chemistry-MacroMol SUBDIR += p5-Chemistry-MidasPattern SUBDIR += p5-Chemistry-Mok SUBDIR += p5-Chemistry-Mol SUBDIR += p5-Chemistry-Pattern SUBDIR += p5-Chemistry-Reaction SUBDIR += p5-Chemistry-Ring SUBDIR += p5-Geo-BUFR SUBDIR += p5-Geo-Coordinates-Converter SUBDIR += p5-Geo-Coordinates-Converter-iArea SUBDIR += p5-Geo-WebService-Elevation-USGS SUBDIR += p5-Mcstas-Tools SUBDIR += p5-PerlMol SUBDIR += p5-Physics-Unit SUBDIR += packmol SUBDIR += pagmo2 SUBDIR += paje SUBDIR += pcmsolver SUBDIR += phonopy SUBDIR += plumed SUBDIR += pnetcdf SUBDIR += pulseview SUBDIR += py-DendroPy SUBDIR += py-GPy SUBDIR += py-GPyOpt SUBDIR += py-MDAnalysis SUBDIR += py-MDAnalysisTests SUBDIR += py-OpenFermion SUBDIR += py-PubChemPy SUBDIR += py-PyFR SUBDIR += py-SimpleSpectral SUBDIR += py-abipy SUBDIR += py-access SUBDIR += py-asdf SUBDIR += py-ase SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chainer SUBDIR += py-chainer-chemistry SUBDIR += py-chempy SUBDIR += py-cirq-aqt SUBDIR += py-cirq-core SUBDIR += py-cirq-google SUBDIR += py-cirq-ionq SUBDIR += py-cirq-pasqal SUBDIR += py-coards SUBDIR += py-dipy SUBDIR += py-dlib SUBDIR += py-eccodes SUBDIR += py-esda SUBDIR += py-geolinks SUBDIR += py-geomet SUBDIR += py-geometer SUBDIR += py-geometric SUBDIR += py-gpaw SUBDIR += py-gsd SUBDIR += py-h5json SUBDIR += py-h5py SUBDIR += py-hiphive SUBDIR += py-inequality SUBDIR += py-jupyter_jsmol SUBDIR += py-kim-query SUBDIR += py-kinematics SUBDIR += py-kliff SUBDIR += py-liac-arff SUBDIR += py-libpysal SUBDIR += py-lifelines SUBDIR += py-mdp SUBDIR += py-mmtf-python SUBDIR += py-molmod SUBDIR += py-moltemplate SUBDIR += py-netCDF4 SUBDIR += py-netcdf-flattener SUBDIR += py-nibabel SUBDIR += py-nilearn SUBDIR += py-obspy SUBDIR += py-oddt SUBDIR += py-openpiv SUBDIR += py-paida SUBDIR += py-paramz SUBDIR += py-phono3py SUBDIR += py-phonopy SUBDIR += py-pupynere SUBDIR += py-pyaixi SUBDIR += py-pycsw SUBDIR += py-pydicom SUBDIR += py-pygeodesy SUBDIR += py-pygeometa SUBDIR += py-pygmo2 SUBDIR += py-pymatgen SUBDIR += py-pymol SUBDIR += py-pyosf SUBDIR += py-pysal SUBDIR += py-pyscf SUBDIR += py-pyteomics SUBDIR += py-qcelemental SUBDIR += py-qcengine SUBDIR += py-qspin SUBDIR += py-quantities SUBDIR += py-rmf SUBDIR += py-rmsd SUBDIR += py-ruffus SUBDIR += py-scikit-fuzzy SUBDIR += py-scikit-learn SUBDIR += py-scikit-optimize SUBDIR += py-scikit-sparse SUBDIR += py-scimath SUBDIR += py-scipy SUBDIR += py-scoria SUBDIR += py-segregation SUBDIR += py-segyio SUBDIR += py-skrebate SUBDIR += py-spaghetti SUBDIR += py-spglib SUBDIR += py-tensorflow SUBDIR += py-tobler SUBDIR += py-veusz SUBDIR += pybrain SUBDIR += pynn SUBDIR += qbox SUBDIR += qcl SUBDIR += qiskit-aer SUBDIR += qmcpack SUBDIR += quantum-espresso SUBDIR += quantum-espresso-pseudopotentials SUBDIR += qwalk SUBDIR += rdkit SUBDIR += rmf SUBDIR += rubygem-ai4r SUBDIR += rubygem-cdo SUBDIR += rubygem-rgeo SUBDIR += rubygem-rgeo-geojson SUBDIR += rubygem-rgeo-proj4 SUBDIR += rubygem-rgeo-shapefile SUBDIR += rubygem-ruby-dcl SUBDIR += rubygem-ruby-netcdf SUBDIR += scidavis SUBDIR += segyio SUBDIR += shelxle SUBDIR += siconos SUBDIR += siesta SUBDIR += sigrok-cli SUBDIR += sigrok-firmware SUBDIR += sigrok-firmware-fx2lafw SUBDIR += sigrok-firmware-utils SUBDIR += silo SUBDIR += simbody SUBDIR += simgrid SUBDIR += simint SUBDIR += simlib SUBDIR += simsmith SUBDIR += smoldyn SUBDIR += sparta SUBDIR += spglib SUBDIR += step SUBDIR += svmlight SUBDIR += szip SUBDIR += teem SUBDIR += tfel SUBDIR += tfel-edf SUBDIR += thermofun SUBDIR += tinker SUBDIR += udunits SUBDIR += v_sim SUBDIR += vipster SUBDIR += vmd SUBDIR += voro++ SUBDIR += votca SUBDIR += wannier90 SUBDIR += wwplot SUBDIR += wxmacmolplt SUBDIR += xcfun SUBDIR += xcrysden SUBDIR += xdrawchem SUBDIR += xtb SUBDIR += yoda .include diff --git a/science/openems/Makefile b/science/openems/Makefile new file mode 100644 index 000000000000..083f233dcd3d --- /dev/null +++ b/science/openems/Makefile @@ -0,0 +1,35 @@ +PORTNAME= openems +DISTVERSIONPREFIX= v +DISTVERSION= 0.0.35-71 +DISTVERSIONSUFFIX= -g4c24b6e +CATEGORIES= science + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Electromagnetic field solver using the EC-FDTD method + +LICENSE= GPLv3 +LICENSE_FILE= ${WRKSRC}/COPYING + +LIB_DEPENDS= libboost_system.so:devel/boost-libs \ + libCSXCAD.so:cad/csxcad \ + libfparser-4.5.so:math/fparser \ + libhdf5.so:science/hdf5 \ + libsz.so:science/szip \ + libtinyxml.so:textproc/tinyxml \ + libvtkCommonCore-9.0.so:math/vtk9 + +USES= cmake pkgconfig +USE_LDCONFIG= yes + +USE_GITHUB= yes +GH_ACCOUNT= thliebig +GH_PROJECT= openEMS + +CXXFLAGS+= -I${LOCALBASE}/include/fparser # fparser.pc probably returns a wrong value + +DATADIR= ${PREFIX}/share/openEMS + +post-install: + @${REINPLACE_CMD} -i '' -e 's|#!/bin/bash|#!/bin/sh|' ${STAGEDIR}${PREFIX}/bin/openEMS.sh + +.include diff --git a/science/openems/distinfo b/science/openems/distinfo new file mode 100644 index 000000000000..64eb8ebc0c96 --- /dev/null +++ b/science/openems/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1629334571 +SHA256 (thliebig-openEMS-v0.0.35-71-g4c24b6e_GH0.tar.gz) = 33690c506c52d8139e8e92734a4478f323156538aafa1e9260c3a4a68e6b563e +SIZE (thliebig-openEMS-v0.0.35-71-g4c24b6e_GH0.tar.gz) = 1726662 diff --git a/science/openems/pkg-descr b/science/openems/pkg-descr new file mode 100644 index 000000000000..68a45a169430 --- /dev/null +++ b/science/openems/pkg-descr @@ -0,0 +1,8 @@ +openEMS is a free and open electromagnetic field solver using the FDTD method. +Matlab or Octave are used as an easy and flexible scripting interface. + +It features: +* fully 3D Cartesian and cylindrical coordinates graded mesh +* multi-threading, SIMD (SSE) and MPI support for high speed FDTD + +WWW: https://openems.de/start/ diff --git a/science/openems/pkg-plist b/science/openems/pkg-plist new file mode 100644 index 000000000000..a886fef35d2f --- /dev/null +++ b/science/openems/pkg-plist @@ -0,0 +1,132 @@ +bin/nf2ff +bin/openEMS +bin/openEMS.sh +include/openEMS/nf2ff.h +include/openEMS/openems.h +include/openEMS/openems_global.h +lib/libnf2ff.so +lib/libnf2ff.so.0 +lib/libnf2ff.so.0.1.0 +lib/libopenEMS.so +lib/libopenEMS.so.0 +lib/libopenEMS.so.0.0.35 +%%DATADIR%%/matlab/AR_estimate.m +%%DATADIR%%/matlab/Add2Queue.m +%%DATADIR%%/matlab/AddCPWPort.m +%%DATADIR%%/matlab/AddCircWaveGuidePort.m +%%DATADIR%%/matlab/AddCoaxialPort.m +%%DATADIR%%/matlab/AddCurvePort.m +%%DATADIR%%/matlab/AddLumpedPort.m +%%DATADIR%%/matlab/AddMRStub.m +%%DATADIR%%/matlab/AddMSLPort.m +%%DATADIR%%/matlab/AddPML.m +%%DATADIR%%/matlab/AddRectWaveGuidePort.m +%%DATADIR%%/matlab/AddStripLinePort.m +%%DATADIR%%/matlab/AddWaveGuidePort.m +%%DATADIR%%/matlab/AnalyzeNF2FF.m +%%DATADIR%%/matlab/CalcNF2FF.m +%%DATADIR%%/matlab/CheckQueue.m +%%DATADIR%%/matlab/ConvertHDF5_VTK.m +%%DATADIR%%/matlab/CreateNF2FFBox.m +%%DATADIR%%/matlab/DFT_time2freq.m +%%DATADIR%%/matlab/DelayFidelity.m +%%DATADIR%%/matlab/Dump2VTK.m +%%DATADIR%%/matlab/DumpFF2VTK.m +%%DATADIR%%/matlab/FFT_time2freq.m +%%DATADIR%%/matlab/FindFreeSSH.m +%%DATADIR%%/matlab/FinishQueue.m +%%DATADIR%%/matlab/GetField_Interpolation.m +%%DATADIR%%/matlab/GetField_Range.m +%%DATADIR%%/matlab/GetField_SubSampling.m +%%DATADIR%%/matlab/GetField_TD2FD.m +%%DATADIR%%/matlab/InitCylindricalFDTD.m +%%DATADIR%%/matlab/InitFDTD.m +%%DATADIR%%/matlab/InitQueue.m +%%DATADIR%%/matlab/PlotHDF5FieldData.m +%%DATADIR%%/matlab/ReadHDF5Attribute.m +%%DATADIR%%/matlab/ReadHDF5Dump.m +%%DATADIR%%/matlab/ReadHDF5FieldData.m +%%DATADIR%%/matlab/ReadHDF5Mesh.m +%%DATADIR%%/matlab/ReadUI.m +%%DATADIR%%/matlab/ResultsQueue.m +%%DATADIR%%/matlab/RunOpenEMS.m +%%DATADIR%%/matlab/RunOpenEMS_MPI.m +%%DATADIR%%/matlab/RunOpenEMS_Parallel.m +%%DATADIR%%/matlab/SetBoundaryCond.m +%%DATADIR%%/matlab/SetCustomExcite.m +%%DATADIR%%/matlab/SetDiracExcite.m +%%DATADIR%%/matlab/SetGaussExcite.m +%%DATADIR%%/matlab/SetSinusExcite.m +%%DATADIR%%/matlab/SetStepExcite.m +%%DATADIR%%/matlab/SetupMPI.m +%%DATADIR%%/matlab/Tutorials/Bent_Patch_Antenna.m +%%DATADIR%%/matlab/Tutorials/CRLH_Extraction.m +%%DATADIR%%/matlab/Tutorials/CRLH_LeakyWaveAnt.m +%%DATADIR%%/matlab/Tutorials/Circ_Waveguide.m +%%DATADIR%%/matlab/Tutorials/Conical_Horn_Antenna.m +%%DATADIR%%/matlab/Tutorials/CreateCRLH.m +%%DATADIR%%/matlab/Tutorials/CylindricalWave_CC.m +%%DATADIR%%/matlab/Tutorials/Dipole_SAR.m +%%DATADIR%%/matlab/Tutorials/Helical_Antenna.m +%%DATADIR%%/matlab/Tutorials/Horn_Antenna.m +%%DATADIR%%/matlab/Tutorials/MRI_LP_Birdcage.m +%%DATADIR%%/matlab/Tutorials/MRI_Loop_Coil.m +%%DATADIR%%/matlab/Tutorials/MSL_NotchFilter.m +%%DATADIR%%/matlab/Tutorials/Parallel_Plate_Waveguide.m +%%DATADIR%%/matlab/Tutorials/Patch_Antenna_Array.m +%%DATADIR%%/matlab/Tutorials/Patch_Antenna_Phased_Array.m +%%DATADIR%%/matlab/Tutorials/RCS_Sphere.m +%%DATADIR%%/matlab/Tutorials/RadarUWBTutorial.m +%%DATADIR%%/matlab/Tutorials/Rect_Waveguide.m +%%DATADIR%%/matlab/Tutorials/Simple_Patch_Antenna.m +%%DATADIR%%/matlab/Tutorials/StripLine2MSL.m +%%DATADIR%%/matlab/Tutorials/readme +%%DATADIR%%/matlab/WriteHDF5.m +%%DATADIR%%/matlab/WriteOpenEMS.m +%%DATADIR%%/matlab/calcLumpedPort.m +%%DATADIR%%/matlab/calcPort.m +%%DATADIR%%/matlab/calcTLPort.m +%%DATADIR%%/matlab/calcWGPort.m +%%DATADIR%%/matlab/calc_ypar.m +%%DATADIR%%/matlab/examples/__deprecated__/MSL2.m +%%DATADIR%%/matlab/examples/antennas/Bi_Quad_Antenna.m +%%DATADIR%%/matlab/examples/antennas/Patch_Antenna.m +%%DATADIR%%/matlab/examples/antennas/Patch_Antenna_Array.m +%%DATADIR%%/matlab/examples/antennas/infDipol.m +%%DATADIR%%/matlab/examples/antennas/inverted_f.m +%%DATADIR%%/matlab/examples/optimizer/optimizer_asco.m +%%DATADIR%%/matlab/examples/optimizer/optimizer_simfun.m +%%DATADIR%%/matlab/examples/other/Helix.m +%%DATADIR%%/matlab/examples/other/LumpedElement.m +%%DATADIR%%/matlab/examples/other/Metamaterial_PlaneWave_Drude.m +%%DATADIR%%/matlab/examples/other/PML_reflection_analysis.m +%%DATADIR%%/matlab/examples/other/PlaneWave.m +%%DATADIR%%/matlab/examples/other/gauss_excitation_test.m +%%DATADIR%%/matlab/examples/other/resistance_sheet.m +%%DATADIR%%/matlab/examples/transmission_lines/CPW_Line.m +%%DATADIR%%/matlab/examples/transmission_lines/Finite_Stripline.m +%%DATADIR%%/matlab/examples/transmission_lines/MSL.m +%%DATADIR%%/matlab/examples/transmission_lines/MSL_Losses.m +%%DATADIR%%/matlab/examples/transmission_lines/Stripline.m +%%DATADIR%%/matlab/examples/transmission_lines/directional_coupler.m +%%DATADIR%%/matlab/examples/waveguide/Circ_Waveguide.m +%%DATADIR%%/matlab/examples/waveguide/Circ_Waveguide_CylinderCoords.m +%%DATADIR%%/matlab/examples/waveguide/Coax.m +%%DATADIR%%/matlab/examples/waveguide/Coax_CylinderCoords.m +%%DATADIR%%/matlab/examples/waveguide/Coax_Cylindrical_MG.m +%%DATADIR%%/matlab/examples/waveguide/Rect_Waveguide.m +%%DATADIR%%/matlab/h5readatt_octave.cc +%%DATADIR%%/matlab/harminv.m +%%DATADIR%%/matlab/optimize.m +%%DATADIR%%/matlab/optimizer_asco_sim.m +%%DATADIR%%/matlab/physical_constants.m +%%DATADIR%%/matlab/plotFF3D.m +%%DATADIR%%/matlab/plotFFdB.m +%%DATADIR%%/matlab/plotRefl.m +%%DATADIR%%/matlab/polarFF.m +%%DATADIR%%/matlab/private/ReadNF2FF.m +%%DATADIR%%/matlab/private/invoke_openEMS.m +%%DATADIR%%/matlab/queue_addProcess.m +%%DATADIR%%/matlab/queue_checkProcess.m +%%DATADIR%%/matlab/queue_delProcess.m +%%DATADIR%%/matlab/setup.m