diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile index e91f94f5d1fd..8e12dd618f5b 100644 --- a/biology/py-pysam/Makefile +++ b/biology/py-pysam/Makefile @@ -1,21 +1,24 @@ PORTNAME= pysam -DISTVERSION= 0.19.1 -PORTREVISION= 1 +DISTVERSION= 0.20.0 CATEGORIES= biology python MASTER_SITES= CHEESESHOP PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} -PATCH_SITES= https://github.com/pysam-developers/pysam/commit/ -PATCHFILES= 064c8024395a15024fd590bd90f55f918e15545f.patch:-p1 # backport of symbols failure fix for arm and risc - MAINTAINER= yuri@FreeBSD.org COMMENT= Python module for reading, manipulating and writing genomic data sets WWW= https://github.com/pysam-developers/pysam LICENSE= MIT LICENSE_FILE= ${WRKSRC}/COPYING USES= gmake python:3.6-3.9 -USE_PYTHON= autoplist distutils cython cython_run +USE_PYTHON= autoplist distutils cython cython_run pytest + +CFLAGS+= -fPIC # workaround for https://github.com/pysam-developers/pysam/issues/1146 + +BINARY_ALIAS= make=${GMAKE} + +post-install: + @${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysam/lib*${PYTHON_EXT_SUFFIX}.so .include diff --git a/biology/py-pysam/distinfo b/biology/py-pysam/distinfo index e92952ac8d70..ff34934adf54 100644 --- a/biology/py-pysam/distinfo +++ b/biology/py-pysam/distinfo @@ -1,5 +1,3 @@ -TIMESTAMP = 1658245018 -SHA256 (pysam-0.19.1.tar.gz) = dee403cbdf232170c1e11cc24c76e7dd748fc672ad38eb0414f3b9d569b1448f -SIZE (pysam-0.19.1.tar.gz) = 3857553 -SHA256 (064c8024395a15024fd590bd90f55f918e15545f.patch) = e4655d70d0debe00f7937b9b3f18318acbcb8ae832165542c1531233320c6df7 -SIZE (064c8024395a15024fd590bd90f55f918e15545f.patch) = 1237 +TIMESTAMP = 1668031193 +SHA256 (pysam-0.20.0.tar.gz) = 7cc250148ba0ffc9bdc38db6988b91e13b75db0d11c18cf1336467d1c97dd312 +SIZE (pysam-0.20.0.tar.gz) = 3958505