diff --git a/biology/fastx-toolkit/Makefile b/biology/fastx-toolkit/Makefile index 186707811d00..178e25f12f0c 100644 --- a/biology/fastx-toolkit/Makefile +++ b/biology/fastx-toolkit/Makefile @@ -1,23 +1,24 @@ PORTNAME= fastx_toolkit -PORTVERSION= 0.0.14 +DISTVERSION= 0.0.14 +PORTREVISION= 1 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= CLI tools for Short-Reads FASTA/FASTQ files preprocessing WWW= http://hannonlab.cshl.edu/fastx_toolkit/ LICENSE= AGPLv3+ LICENSE_FILE= ${WRKSRC}/COPYING LIB_DEPENDS= libgtextutils.so:biology/libgtextutils USES= autoreconf libtool perl5 pkgconfig shebangfix USE_PERL5= run SHEBANG_FILES= scripts/*.pl USE_GITHUB= yes GH_ACCOUNT= agordon GNU_CONFIGURE= yes CONFLICTS_INSTALL= autoconf-archive # share/aclocal/ax_c_long_long.m4 .include diff --git a/biology/fastx-toolkit/distinfo b/biology/fastx-toolkit/distinfo index edf281a52f1e..9a57875c9b88 100644 --- a/biology/fastx-toolkit/distinfo +++ b/biology/fastx-toolkit/distinfo @@ -1,2 +1,3 @@ +TIMESTAMP = 1678210010 SHA256 (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = af4f9fe59f8c91bdd2d735bdac1fd89f0549b2bc759313fe3b86948056aad1aa SIZE (agordon-fastx_toolkit-0.0.14_GH0.tar.gz) = 259576 diff --git a/biology/fastx-toolkit/files/patch-configure.ac b/biology/fastx-toolkit/files/patch-configure.ac new file mode 100644 index 000000000000..e3a18a3e1838 --- /dev/null +++ b/biology/fastx-toolkit/files/patch-configure.ac @@ -0,0 +1,10 @@ +--- configure.ac.orig 2023-03-07 17:18:12 UTC ++++ configure.ac +@@ -31,7 +31,6 @@ dnl fi + PKG_CHECK_MODULES([GTEXTUTILS],[gtextutils]) + + dnl --enable-wall +-EXTRA_CHECKS="-Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror" + AC_ARG_ENABLE(wall, + [ --enable-wall Enable many common GCC warnings (-Wall,-Wextra, -Werror etc., default enabled)], + [case "${enableval}" in