diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile
index 0f614818b254..97bceda17ba2 100644
--- a/biology/hyphy/Makefile
+++ b/biology/hyphy/Makefile
@@ -1,27 +1,27 @@
 PORTNAME=	hyphy
-DISTVERSION=	2.5.58
+DISTVERSION=	2.5.60
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org
 COMMENT=	Hypothesis testing using Phylogenies
 WWW=		https://www.hyphy.org/
 
 LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 ONLY_FOR_ARCHS=	aarch64 amd64 i386 powerpc powerpc64 powerpc64le
 
 LIB_DEPENDS=	libcurl.so:ftp/curl
 TEST_DEPENDS=	bash:shells/bash
 
 USES=		cmake:insource,testing localbase:ldflags # tests fail in outsource build, see https://github.com/veg/hyphy/issues/1528
 
 USE_GITHUB=	yes
 GH_ACCOUNT=	veg
 
 OPTIONS_DEFINE=	AVX
 AVX_DESC=	Advanced vector extensions support
 
 AVX_CMAKE_OFF=	-DNOAVX:BOOL=ON
 
 .include <bsd.port.mk>
diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo
index 53b75fc008b5..ebff1227db85 100644
--- a/biology/hyphy/distinfo
+++ b/biology/hyphy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1703351280
-SHA256 (veg-hyphy-2.5.58_GH0.tar.gz) = f448d4a95bdb356eb6b1384b0c507a79f152511ad76bb67170ab5b8eb2798231
-SIZE (veg-hyphy-2.5.58_GH0.tar.gz) = 5593070
+TIMESTAMP = 1713128763
+SHA256 (veg-hyphy-2.5.60_GH0.tar.gz) = bc3a5062ee3cee47de16c394189fb8a5feed48f9a8c12302432d6faa7f2ac301
+SIZE (veg-hyphy-2.5.60_GH0.tar.gz) = 5599910