diff --git a/biology/subread/Makefile b/biology/subread/Makefile
index f1d4b49106e1..e94ede742f9a 100644
--- a/biology/subread/Makefile
+++ b/biology/subread/Makefile
@@ -1,23 +1,25 @@
 PORTNAME=		subread
-DISTVERSION=		2.0.2
+DISTVERSION=		2.0.8
 DISTVERSIONSUFFIX=	-source
 CATEGORIES=		biology
 MASTER_SITES=		SF/${PORTNAME}/${PORTNAME}-${PORTVERSION}
 
 MAINTAINER=	jwb@FreeBSD.org
 COMMENT=	High-performance read alignment, quantification and mutation discovery
-WWW=		http://bioinf.wehi.edu.au/subread-package/
+WWW=		https://subread.sourceforge.net/
 
 LICENSE=	GPLv3
 LICENSE_FILE=	${WRKDIR}/${DISTNAME}/LICENSE
 
 LIB_DEPENDS=	libsysinfo.so:devel/libsysinfo
 
 USES=		gmake localbase:ldflags
 
-MAKEFILE=	${FILESDIR}/Makefile.pkg
 WRKSRC_SUBDIR=	src
-CFLAGS+=	-fcommon
+
+MAKEFILE=	${FILESDIR}/Makefile.pkg
 INSTALL_TARGET=	install-strip
 
+CFLAGS+=	-fcommon
+
 .include <bsd.port.mk>
diff --git a/biology/subread/distinfo b/biology/subread/distinfo
index 65c193e7ae1a..7e6e9e5f7d23 100644
--- a/biology/subread/distinfo
+++ b/biology/subread/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1617112862
-SHA256 (subread-2.0.2-source.tar.gz) = 0b64bd51f39f8d322c4594697fa5f0f64fbe60283113eadadff9f4268f897079
-SIZE (subread-2.0.2-source.tar.gz) = 23295764
+TIMESTAMP = 1733935409
+SHA256 (subread-2.0.8-source.tar.gz) = cb5dadf71c850f128a8347223fe0ce19e1c17e3959e9f3eba90e8090671f8570
+SIZE (subread-2.0.8-source.tar.gz) = 26074498
diff --git a/biology/subread/files/patch-longread-one_Makefile b/biology/subread/files/patch-longread-one_Makefile
index ef09f35cd441..41a2a468ea37 100644
--- a/biology/subread/files/patch-longread-one_Makefile
+++ b/biology/subread/files/patch-longread-one_Makefile
@@ -1,30 +1,32 @@
---- longread-one/Makefile.orig	2019-09-04 04:22:49 UTC
+--- longread-one/Makefile.orig	2024-07-25 00:35:55 UTC
 +++ longread-one/Makefile
 @@ -1,12 +1,12 @@
 -CC_EXEC = gcc
  OPT_LEVEL = 3
  
  include ../makefile.version
  include make.version
  
--CCFLAGS = -mtune=core2 ${MACOS} -O${OPT_LEVEL} -Wall  -DMAKE_FOR_EXON  -D MAKE_STANDALONE  -D_FILE_OFFSET_BITS=64 -DSUBREAD_VERSION=\"${SUBREAD_VERSION}\" ${WARNING_LEVEL} ${MINGW32}
+-CCFLAGS =  ${MACOS} -O${OPT_LEVEL} -Wall  -DMAKE_FOR_EXON  -D MAKE_STANDALONE  -D_FILE_OFFSET_BITS=64 -DSUBREAD_VERSION=\"${SUBREAD_VERSION}\" ${WARNING_LEVEL} ${MINGW32}
 -LDFLAGS =  -lpthread -lz -lm -O${OPT_LEVEL} -DMAKE_FOR_EXON -D MAKE_STANDALONE # -DREPORT_ALL_THE_BEST
 -CC = ${CC_EXEC}  ${CCFLAGS}  -fmessage-length=0  -ggdb
 +CC ?= gcc
-+CFLAGS += -DMAKE_FOR_EXON  -D MAKE_STANDALONE  -D_FILE_OFFSET_BITS=64 \
-+	-DSUBREAD_VERSION=\"${SUBREAD_VERSION}\" ${WARNING_LEVEL} ${MINGW32}
++CCFLAGS += -DMAKE_FOR_EXON  -D MAKE_STANDALONE  -D_FILE_OFFSET_BITS=64 \
++	    -DSUBREAD_VERSION=\"${SUBREAD_VERSION}\" ${WARNING_LEVEL} ${MINGW32}
 +LDFLAGS +=  -lpthread -lz -lm -O${OPT_LEVEL} -DMAKE_FOR_EXON -D MAKE_STANDALONE # -DREPORT_ALL_THE_BEST
  
  ALL_LIBS=LRMsorted-hashtable LRMbase-index LRMchro-event LRMhelper LRMseek-zlib LRMfile-io LRMhashtable
  ALL_OBJECTS=$(addsuffix .o, ${ALL_LIBS})
-@@ -20,8 +20,8 @@ clean:
+@@ -19,9 +19,8 @@ clean:
+ clean:
  	rm -f *.o LRM
  
- LRM: longread-mapping.c  ${ALL_OBJECTS} 
+-LRM: longread-mapping.c  ${ALL_OBJECTS} 
 -	${CC} -o LRM longread-mapping.c   ${ALL_OBJECTS}  ${LDFLAGS}
++LRM: longread-mapping.c  ${ALL_OBJECTS}
 +	${CC} -o LRM ${CFLAGS} longread-mapping.c   ${ALL_OBJECTS}  ${LDFLAGS}
  
  $(ALL_OBJECTS): $(ALL_C) $(ALL_H)
 -	$(CC) -o $@ -c $(subst .o,.c,$@)
+-	
 +	$(CC) -o $@ -c ${CFLAGS} $(subst .o,.c,$@)
-