diff --git a/biology/seqan3/Makefile b/biology/seqan3/Makefile
index b40ea02c1c63..9c8fc69ba93e 100644
--- a/biology/seqan3/Makefile
+++ b/biology/seqan3/Makefile
@@ -1,40 +1,40 @@
 PORTNAME=	seqan3
-DISTVERSION=	3.2.0
-PORTREVISION=	2
+DISTVERSION=	3.3.0
 CATEGORIES=	biology devel math
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	C++ header-only library for biological sequence analysis
 WWW=		https://github.com/seqan/seqan3
 
 LICENSE=	BSD3CLAUSE
 LICENSE_FILE=	${WRKSRC}/LICENSE.md
 
 HPP_DEPENDS=	cereal>0:devel/cereal \
 		range-v3>0:devel/range-v3
 BUILD_DEPENDS=	${HPP_DEPENDS}
 RUN_DEPENDS=	${HPP_DEPENDS} \
 		coin-or-lemon>0:math/lemon
 
 USES=		cmake localbase
 
 USE_GITHUB=	yes
 GH_ACCOUNT=	seqan
-GH_TUPLE=	xxsds:sdsl-lite:cf9ff4a:sdsl_lite/submodules/sdsl-lite
+GH_TUPLE=	xxsds:sdsl-lite:d54d389:sdsl_lite/submodules/sdsl-lite
 
 USE_GCC=	yes # tests only pass with gcc, see https://github.com/seqan/seqan3/issues/2643, otherwise gcc isn't needed because this is a header-only library
+# tests fail to compile, see https://github.com/seqan/seqan3/issues/3191
 
 TEST_WRKSRC=	${WRKSRC}/.test
 
 NO_ARCH=	yes
 
 post-install:
 	@${RM} -r ${STAGEDIR}${DOCSDIR}
 
 do-test:
 	@${MKDIR} ${TEST_WRKSRC} && cd ${TEST_WRKSRC} && \
 		${SETENV} ${CONFIGURE_ENV} ${CMAKE_BIN} ${CMAKE_ARGS} ${WRKSRC}/test/unit && \
 		${SETENV} ${MAKE_ENV} ${MAKE_CMD} ${MAKE_ARGS} ${ALL_TARGET} && \
 		ctest
 
 .include <bsd.port.mk>
diff --git a/biology/seqan3/distinfo b/biology/seqan3/distinfo
index d15df1a95c74..8fa5387420f9 100644
--- a/biology/seqan3/distinfo
+++ b/biology/seqan3/distinfo
@@ -1,5 +1,5 @@
-TIMESTAMP = 1656041922
-SHA256 (seqan-seqan3-3.2.0_GH0.tar.gz) = 80d41dd035407cfec83eb3a4466d0421adc27129af684290c0c4da31421e7276
-SIZE (seqan-seqan3-3.2.0_GH0.tar.gz) = 1522246
-SHA256 (xxsds-sdsl-lite-cf9ff4a_GH0.tar.gz) = 9e328d00c3bdead09cfa35e75e20ace0e668d6dac0436ce9256f2156088f22e8
-SIZE (xxsds-sdsl-lite-cf9ff4a_GH0.tar.gz) = 1166065
+TIMESTAMP = 1694368553
+SHA256 (seqan-seqan3-3.3.0_GH0.tar.gz) = 96975406445c8a5974803eefa146ee2f85206f6d2c2bccf45171ee0b1a653fb8
+SIZE (seqan-seqan3-3.3.0_GH0.tar.gz) = 1564852
+SHA256 (xxsds-sdsl-lite-d54d389_GH0.tar.gz) = eaac28144b34a833afb8c03139abbe427d4b95a827bf5b9b6532353f9cff9ec1
+SIZE (xxsds-sdsl-lite-d54d389_GH0.tar.gz) = 1183835
diff --git a/biology/seqan3/pkg-plist b/biology/seqan3/pkg-plist
index 4883e10f6d4b..19d86e63d82e 100644
--- a/biology/seqan3/pkg-plist
+++ b/biology/seqan3/pkg-plist
@@ -1,557 +1,569 @@
 include/seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp
 include/seqan3/alignment/aligned_sequence/all.hpp
 include/seqan3/alignment/aligned_sequence/debug_stream_alignment.hpp
 include/seqan3/alignment/all.hpp
+include/seqan3/alignment/cigar_conversion/alignment_from_cigar.hpp
+include/seqan3/alignment/cigar_conversion/all.hpp
+include/seqan3/alignment/cigar_conversion/cigar_from_alignment.hpp
 include/seqan3/alignment/configuration/align_config_band.hpp
 include/seqan3/alignment/configuration/align_config_debug.hpp
 include/seqan3/alignment/configuration/align_config_edit.hpp
 include/seqan3/alignment/configuration/align_config_gap_cost_affine.hpp
 include/seqan3/alignment/configuration/align_config_method.hpp
 include/seqan3/alignment/configuration/align_config_min_score.hpp
 include/seqan3/alignment/configuration/align_config_on_result.hpp
 include/seqan3/alignment/configuration/align_config_output.hpp
 include/seqan3/alignment/configuration/align_config_parallel.hpp
 include/seqan3/alignment/configuration/align_config_result_type.hpp
 include/seqan3/alignment/configuration/align_config_score_type.hpp
 include/seqan3/alignment/configuration/align_config_scoring_scheme.hpp
 include/seqan3/alignment/configuration/align_config_vectorised.hpp
 include/seqan3/alignment/configuration/all.hpp
 include/seqan3/alignment/configuration/detail.hpp
 include/seqan3/alignment/decorator/all.hpp
 include/seqan3/alignment/decorator/gap_decorator.hpp
 include/seqan3/alignment/detail/pairwise_alignment_concept.hpp
 include/seqan3/alignment/exception.hpp
 include/seqan3/alignment/matrix/all.hpp
 include/seqan3/alignment/matrix/detail/advanceable_alignment_coordinate.hpp
 include/seqan3/alignment/matrix/detail/affine_cell_proxy.hpp
 include/seqan3/alignment/matrix/detail/aligned_sequence_builder.hpp
 include/seqan3/alignment/matrix/detail/alignment_matrix_column_major_range_base.hpp
 include/seqan3/alignment/matrix/detail/alignment_optimum.hpp
 include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column.hpp
 include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_banded.hpp
 include/seqan3/alignment/matrix/detail/alignment_score_matrix_one_column_base.hpp
 include/seqan3/alignment/matrix/detail/alignment_score_matrix_proxy.hpp
 include/seqan3/alignment/matrix/detail/alignment_trace_matrix_base.hpp
 include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full.hpp
 include/seqan3/alignment/matrix/detail/alignment_trace_matrix_full_banded.hpp
 include/seqan3/alignment/matrix/detail/alignment_trace_matrix_proxy.hpp
 include/seqan3/alignment/matrix/detail/all.hpp
 include/seqan3/alignment/matrix/detail/combined_score_and_trace_matrix.hpp
 include/seqan3/alignment/matrix/detail/coordinate_matrix.hpp
 include/seqan3/alignment/matrix/detail/debug_matrix.hpp
 include/seqan3/alignment/matrix/detail/edit_distance_score_matrix_full.hpp
 include/seqan3/alignment/matrix/detail/edit_distance_trace_matrix_full.hpp
 include/seqan3/alignment/matrix/detail/matrix_concept.hpp
 include/seqan3/alignment/matrix/detail/matrix_coordinate.hpp
 include/seqan3/alignment/matrix/detail/row_wise_matrix.hpp
 include/seqan3/alignment/matrix/detail/score_matrix_single_column.hpp
 include/seqan3/alignment/matrix/detail/trace_directions.hpp
 include/seqan3/alignment/matrix/detail/trace_iterator.hpp
 include/seqan3/alignment/matrix/detail/trace_iterator_banded.hpp
 include/seqan3/alignment/matrix/detail/trace_iterator_base.hpp
 include/seqan3/alignment/matrix/detail/trace_matrix_full.hpp
 include/seqan3/alignment/matrix/detail/two_dimensional_matrix.hpp
 include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_base.hpp
 include/seqan3/alignment/matrix/detail/two_dimensional_matrix_iterator_concept.hpp
 include/seqan3/alignment/pairwise/align_pairwise.hpp
 include/seqan3/alignment/pairwise/align_result_selector.hpp
 include/seqan3/alignment/pairwise/alignment_algorithm.hpp
 include/seqan3/alignment/pairwise/alignment_configurator.hpp
 include/seqan3/alignment/pairwise/alignment_result.hpp
 include/seqan3/alignment/pairwise/all.hpp
 include/seqan3/alignment/pairwise/detail/alignment_algorithm_state.hpp
 include/seqan3/alignment/pairwise/detail/concept.hpp
 include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm.hpp
 include/seqan3/alignment/pairwise/detail/pairwise_alignment_algorithm_banded.hpp
 include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion.hpp
 include/seqan3/alignment/pairwise/detail/policy_affine_gap_recursion_banded.hpp
 include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion.hpp
 include/seqan3/alignment/pairwise/detail/policy_affine_gap_with_trace_recursion_banded.hpp
 include/seqan3/alignment/pairwise/detail/policy_alignment_matrix.hpp
 include/seqan3/alignment/pairwise/detail/policy_alignment_result_builder.hpp
 include/seqan3/alignment/pairwise/detail/policy_optimum_tracker.hpp
 include/seqan3/alignment/pairwise/detail/policy_optimum_tracker_simd.hpp
 include/seqan3/alignment/pairwise/detail/policy_scoring_scheme.hpp
 include/seqan3/alignment/pairwise/detail/type_traits.hpp
 include/seqan3/alignment/pairwise/edit_distance_algorithm.hpp
 include/seqan3/alignment/pairwise/edit_distance_fwd.hpp
 include/seqan3/alignment/pairwise/edit_distance_unbanded.hpp
 include/seqan3/alignment/pairwise/policy/affine_gap_init_policy.hpp
 include/seqan3/alignment/pairwise/policy/affine_gap_policy.hpp
 include/seqan3/alignment/pairwise/policy/alignment_matrix_policy.hpp
 include/seqan3/alignment/pairwise/policy/all.hpp
 include/seqan3/alignment/pairwise/policy/find_optimum_policy.hpp
 include/seqan3/alignment/pairwise/policy/scoring_scheme_policy.hpp
 include/seqan3/alignment/pairwise/policy/simd_affine_gap_policy.hpp
 include/seqan3/alignment/pairwise/policy/simd_find_optimum_policy.hpp
 include/seqan3/alignment/scoring/all.hpp
 include/seqan3/alignment/scoring/aminoacid_scoring_scheme.hpp
 include/seqan3/alignment/scoring/detail/simd_match_mismatch_scoring_scheme.hpp
 include/seqan3/alignment/scoring/detail/simd_matrix_scoring_scheme.hpp
 include/seqan3/alignment/scoring/nucleotide_scoring_scheme.hpp
 include/seqan3/alignment/scoring/scoring_scheme_base.hpp
 include/seqan3/alignment/scoring/scoring_scheme_concept.hpp
 include/seqan3/alphabet/adaptation/all.hpp
 include/seqan3/alphabet/adaptation/char.hpp
 include/seqan3/alphabet/adaptation/uint.hpp
 include/seqan3/alphabet/all.hpp
 include/seqan3/alphabet/alphabet_base.hpp
 include/seqan3/alphabet/aminoacid/aa10li.hpp
 include/seqan3/alphabet/aminoacid/aa10murphy.hpp
 include/seqan3/alphabet/aminoacid/aa20.hpp
 include/seqan3/alphabet/aminoacid/aa27.hpp
 include/seqan3/alphabet/aminoacid/all.hpp
 include/seqan3/alphabet/aminoacid/aminoacid_base.hpp
 include/seqan3/alphabet/aminoacid/concept.hpp
 include/seqan3/alphabet/aminoacid/translation.hpp
 include/seqan3/alphabet/aminoacid/translation_details.hpp
 include/seqan3/alphabet/aminoacid/translation_genetic_code.hpp
 include/seqan3/alphabet/cigar/all.hpp
 include/seqan3/alphabet/cigar/cigar.hpp
 include/seqan3/alphabet/cigar/exposition_only/cigar_operation.hpp
 include/seqan3/alphabet/composite/all.hpp
 include/seqan3/alphabet/composite/alphabet_tuple_base.hpp
 include/seqan3/alphabet/composite/alphabet_variant.hpp
 include/seqan3/alphabet/composite/detail.hpp
 include/seqan3/alphabet/composite/semialphabet_any.hpp
 include/seqan3/alphabet/concept.hpp
 include/seqan3/alphabet/container/all.hpp
 include/seqan3/alphabet/container/bitpacked_sequence.hpp
 include/seqan3/alphabet/container/concatenated_sequences.hpp
 include/seqan3/alphabet/detail/alphabet_proxy.hpp
 include/seqan3/alphabet/detail/concept.hpp
 include/seqan3/alphabet/detail/convert.hpp
 include/seqan3/alphabet/detail/debug_stream_alphabet.hpp
 include/seqan3/alphabet/exception.hpp
 include/seqan3/alphabet/gap/all.hpp
 include/seqan3/alphabet/gap/gap.hpp
 include/seqan3/alphabet/gap/gapped.hpp
 include/seqan3/alphabet/hash.hpp
 include/seqan3/alphabet/mask/all.hpp
 include/seqan3/alphabet/mask/mask.hpp
 include/seqan3/alphabet/mask/masked.hpp
 include/seqan3/alphabet/nucleotide/all.hpp
 include/seqan3/alphabet/nucleotide/concept.hpp
 include/seqan3/alphabet/nucleotide/dna15.hpp
 include/seqan3/alphabet/nucleotide/dna16sam.hpp
 include/seqan3/alphabet/nucleotide/dna3bs.hpp
 include/seqan3/alphabet/nucleotide/dna4.hpp
 include/seqan3/alphabet/nucleotide/dna5.hpp
 include/seqan3/alphabet/nucleotide/nucleotide_base.hpp
 include/seqan3/alphabet/nucleotide/rna15.hpp
 include/seqan3/alphabet/nucleotide/rna4.hpp
 include/seqan3/alphabet/nucleotide/rna5.hpp
 include/seqan3/alphabet/quality/aliases.hpp
 include/seqan3/alphabet/quality/all.hpp
 include/seqan3/alphabet/quality/concept.hpp
 include/seqan3/alphabet/quality/phred42.hpp
 include/seqan3/alphabet/quality/phred63.hpp
 include/seqan3/alphabet/quality/phred68solexa.hpp
 include/seqan3/alphabet/quality/phred94.hpp
 include/seqan3/alphabet/quality/phred_base.hpp
 include/seqan3/alphabet/quality/qualified.hpp
 include/seqan3/alphabet/range/all.hpp
 include/seqan3/alphabet/range/hash.hpp
 include/seqan3/alphabet/range/sequence.hpp
 include/seqan3/alphabet/structure/all.hpp
 include/seqan3/alphabet/structure/concept.hpp
 include/seqan3/alphabet/structure/dot_bracket3.hpp
 include/seqan3/alphabet/structure/dssp9.hpp
 include/seqan3/alphabet/structure/structured_aa.hpp
 include/seqan3/alphabet/structure/structured_rna.hpp
 include/seqan3/alphabet/structure/wuss.hpp
 include/seqan3/alphabet/views/all.hpp
 include/seqan3/alphabet/views/char_strictly_to.hpp
 include/seqan3/alphabet/views/char_to.hpp
 include/seqan3/alphabet/views/complement.hpp
 include/seqan3/alphabet/views/rank_to.hpp
 include/seqan3/alphabet/views/to_char.hpp
 include/seqan3/alphabet/views/to_rank.hpp
 include/seqan3/alphabet/views/translate.hpp
 include/seqan3/alphabet/views/translate_join.hpp
 include/seqan3/alphabet/views/trim_quality.hpp
 include/seqan3/alphabet/views/validate_char_for.hpp
 include/seqan3/argument_parser/all.hpp
 include/seqan3/argument_parser/argument_parser.hpp
 include/seqan3/argument_parser/auxiliary.hpp
 include/seqan3/argument_parser/detail/concept.hpp
 include/seqan3/argument_parser/detail/format_base.hpp
 include/seqan3/argument_parser/detail/format_help.hpp
 include/seqan3/argument_parser/detail/format_html.hpp
 include/seqan3/argument_parser/detail/format_man.hpp
 include/seqan3/argument_parser/detail/format_parse.hpp
 include/seqan3/argument_parser/detail/terminal.hpp
 include/seqan3/argument_parser/detail/version_check.hpp
 include/seqan3/argument_parser/exceptions.hpp
 include/seqan3/argument_parser/validators.hpp
+include/seqan3/contrib/README.md
 include/seqan3/contrib/parallel/buffer_queue.hpp
 include/seqan3/contrib/parallel/serialised_resource_pool.hpp
 include/seqan3/contrib/parallel/suspendable_queue.hpp
+include/seqan3/contrib/std/.clang-format
+include/seqan3/contrib/std/.gitignore
+include/seqan3/contrib/std/LICENSE
+include/seqan3/contrib/std/README.md
+include/seqan3/contrib/std/all_view.hpp
+include/seqan3/contrib/std/chunk_view.hpp
+include/seqan3/contrib/std/concepts.hpp
+include/seqan3/contrib/std/detail/adaptor_base.hpp
+include/seqan3/contrib/std/detail/adaptor_for_view_without_args.hpp
+include/seqan3/contrib/std/detail/adaptor_from_functor.hpp
+include/seqan3/contrib/std/detail/compiler_definitions.hpp
+include/seqan3/contrib/std/detail/exposition_only.hpp
+include/seqan3/contrib/std/detail/non_propagating_cache.hpp
+include/seqan3/contrib/std/join_with_view.hpp
+include/seqan3/contrib/std/pair.hpp
+include/seqan3/contrib/std/to.hpp
+include/seqan3/contrib/std/tuple.hpp
+include/seqan3/contrib/std/zip_view.hpp
+include/seqan3/contrib/stream/bgzf.hpp
 include/seqan3/contrib/stream/bgzf_istream.hpp
 include/seqan3/contrib/stream/bgzf_ostream.hpp
 include/seqan3/contrib/stream/bgzf_stream_util.hpp
 include/seqan3/contrib/stream/bz2_istream.hpp
 include/seqan3/contrib/stream/bz2_ostream.hpp
 include/seqan3/contrib/stream/gz_istream.hpp
 include/seqan3/contrib/stream/gz_ostream.hpp
 include/seqan3/core/add_enum_bitwise_operators.hpp
 include/seqan3/core/algorithm/algorithm_result_generator_range.hpp
 include/seqan3/core/algorithm/all.hpp
 include/seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp
 include/seqan3/core/algorithm/detail/all.hpp
 include/seqan3/core/algorithm/detail/execution_handler_parallel.hpp
 include/seqan3/core/algorithm/detail/execution_handler_sequential.hpp
 include/seqan3/core/all.hpp
 include/seqan3/core/concept/all.hpp
 include/seqan3/core/concept/cereal.hpp
 include/seqan3/core/configuration/all.hpp
 include/seqan3/core/configuration/configuration.hpp
 include/seqan3/core/configuration/detail/all.hpp
 include/seqan3/core/configuration/detail/concept.hpp
 include/seqan3/core/configuration/detail/configuration_element_debug_mode.hpp
 include/seqan3/core/configuration/detail/configuration_element_parallel_mode.hpp
 include/seqan3/core/configuration/detail/configuration_utility.hpp
 include/seqan3/core/configuration/pipeable_config_element.hpp
 include/seqan3/core/debug_stream.hpp
 include/seqan3/core/debug_stream/all.hpp
 include/seqan3/core/debug_stream/byte.hpp
 include/seqan3/core/debug_stream/debug_stream_type.hpp
 include/seqan3/core/debug_stream/detail/to_string.hpp
 include/seqan3/core/debug_stream/optional.hpp
 include/seqan3/core/debug_stream/range.hpp
 include/seqan3/core/debug_stream/tuple.hpp
 include/seqan3/core/debug_stream/variant.hpp
 include/seqan3/core/detail/all.hpp
 include/seqan3/core/detail/all_view.hpp
 include/seqan3/core/detail/copyable_wrapper.hpp
 include/seqan3/core/detail/customisation_point.hpp
 include/seqan3/core/detail/deferred_crtp_base.hpp
 include/seqan3/core/detail/empty_type.hpp
 include/seqan3/core/detail/is_class_template_declarable.hpp
 include/seqan3/core/detail/iterator_traits.hpp
-include/seqan3/core/detail/persist_view.hpp
 include/seqan3/core/detail/strong_type.hpp
 include/seqan3/core/detail/template_inspection.hpp
 include/seqan3/core/detail/test_accessor.hpp
 include/seqan3/core/detail/transfer_type_modifier_onto.hpp
 include/seqan3/core/platform.hpp
 include/seqan3/core/range/all.hpp
 include/seqan3/core/range/detail/adaptor_base.hpp
 include/seqan3/core/range/detail/adaptor_for_view_without_args.hpp
 include/seqan3/core/range/detail/adaptor_from_functor.hpp
 include/seqan3/core/range/detail/inherited_iterator_base.hpp
 include/seqan3/core/range/detail/misc.hpp
 include/seqan3/core/range/detail/random_access_iterator.hpp
 include/seqan3/core/range/type_traits.hpp
-include/seqan3/core/semiregular_box.hpp
 include/seqan3/io/all.hpp
 include/seqan3/io/detail/ignore_output_iterator.hpp
 include/seqan3/io/detail/in_file_iterator.hpp
 include/seqan3/io/detail/magic_header.hpp
 include/seqan3/io/detail/misc.hpp
 include/seqan3/io/detail/misc_input.hpp
 include/seqan3/io/detail/misc_output.hpp
 include/seqan3/io/detail/out_file_iterator.hpp
 include/seqan3/io/detail/record.hpp
 include/seqan3/io/detail/record_like.hpp
 include/seqan3/io/detail/safe_filesystem_entry.hpp
 include/seqan3/io/exception.hpp
 include/seqan3/io/record.hpp
 include/seqan3/io/sam_file/all.hpp
 include/seqan3/io/sam_file/detail/cigar.hpp
 include/seqan3/io/sam_file/detail/format_sam_base.hpp
 include/seqan3/io/sam_file/format_bam.hpp
 include/seqan3/io/sam_file/format_sam.hpp
 include/seqan3/io/sam_file/header.hpp
 include/seqan3/io/sam_file/input.hpp
 include/seqan3/io/sam_file/input_format_concept.hpp
 include/seqan3/io/sam_file/input_options.hpp
 include/seqan3/io/sam_file/output.hpp
 include/seqan3/io/sam_file/output_format_concept.hpp
 include/seqan3/io/sam_file/output_options.hpp
 include/seqan3/io/sam_file/record.hpp
 include/seqan3/io/sam_file/sam_flag.hpp
 include/seqan3/io/sam_file/sam_tag_dictionary.hpp
 include/seqan3/io/sequence_file/all.hpp
 include/seqan3/io/sequence_file/format_embl.hpp
 include/seqan3/io/sequence_file/format_fasta.hpp
 include/seqan3/io/sequence_file/format_fastq.hpp
 include/seqan3/io/sequence_file/format_genbank.hpp
 include/seqan3/io/sequence_file/input.hpp
 include/seqan3/io/sequence_file/input_format_concept.hpp
 include/seqan3/io/sequence_file/input_options.hpp
 include/seqan3/io/sequence_file/output.hpp
 include/seqan3/io/sequence_file/output_format_concept.hpp
 include/seqan3/io/sequence_file/output_options.hpp
 include/seqan3/io/sequence_file/record.hpp
 include/seqan3/io/stream/all.hpp
 include/seqan3/io/stream/concept.hpp
 include/seqan3/io/stream/detail/fast_istreambuf_iterator.hpp
 include/seqan3/io/stream/detail/fast_ostreambuf_iterator.hpp
 include/seqan3/io/stream/detail/stream_buffer_exposer.hpp
 include/seqan3/io/structure_file/all.hpp
 include/seqan3/io/structure_file/detail.hpp
 include/seqan3/io/structure_file/format_vienna.hpp
 include/seqan3/io/structure_file/input.hpp
 include/seqan3/io/structure_file/input_format_concept.hpp
 include/seqan3/io/structure_file/input_options.hpp
 include/seqan3/io/structure_file/output.hpp
 include/seqan3/io/structure_file/output_format_concept.hpp
 include/seqan3/io/structure_file/output_options.hpp
 include/seqan3/io/structure_file/record.hpp
 include/seqan3/io/views/all.hpp
 include/seqan3/io/views/async_input_buffer.hpp
 include/seqan3/io/views/detail/istreambuf_view.hpp
 include/seqan3/io/views/detail/take_exactly_view.hpp
 include/seqan3/io/views/detail/take_line_view.hpp
 include/seqan3/io/views/detail/take_until_view.hpp
 include/seqan3/search/all.hpp
 include/seqan3/search/configuration/all.hpp
 include/seqan3/search/configuration/default_configuration.hpp
 include/seqan3/search/configuration/detail.hpp
 include/seqan3/search/configuration/hit.hpp
 include/seqan3/search/configuration/max_error.hpp
 include/seqan3/search/configuration/max_error_common.hpp
 include/seqan3/search/configuration/on_result.hpp
 include/seqan3/search/configuration/output.hpp
 include/seqan3/search/configuration/parallel.hpp
 include/seqan3/search/configuration/result_type.hpp
 include/seqan3/search/detail/policy_max_error.hpp
 include/seqan3/search/detail/policy_search_result_builder.hpp
 include/seqan3/search/detail/search_common.hpp
 include/seqan3/search/detail/search_configurator.hpp
 include/seqan3/search/detail/search_scheme_algorithm.hpp
 include/seqan3/search/detail/search_scheme_precomputed.hpp
 include/seqan3/search/detail/search_traits.hpp
 include/seqan3/search/detail/unidirectional_search_algorithm.hpp
 include/seqan3/search/dream_index/all.hpp
 include/seqan3/search/dream_index/interleaved_bloom_filter.hpp
 include/seqan3/search/fm_index/all.hpp
 include/seqan3/search/fm_index/bi_fm_index.hpp
 include/seqan3/search/fm_index/bi_fm_index_cursor.hpp
 include/seqan3/search/fm_index/concept.hpp
 include/seqan3/search/fm_index/detail/fm_index_cursor.hpp
 include/seqan3/search/fm_index/fm_index.hpp
 include/seqan3/search/fm_index/fm_index_cursor.hpp
 include/seqan3/search/kmer_index/all.hpp
 include/seqan3/search/kmer_index/shape.hpp
 include/seqan3/search/search.hpp
 include/seqan3/search/search_result.hpp
 include/seqan3/search/views/all.hpp
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