diff --git a/biology/bcftools/Makefile b/biology/bcftools/Makefile index 15d56d063ec0..4f38d7bd78a2 100644 --- a/biology/bcftools/Makefile +++ b/biology/bcftools/Makefile @@ -1,61 +1,60 @@ # Created by: Reed A. Cartwright PORTNAME= bcftools -PORTVERSION= 1.12 -PORTREVISION= 1 +PORTVERSION= 1.13 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Tools for manipulating next-generation sequencing data LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE LIB_DEPENDS= libhts.so:biology/htslib TEST_DEPENDS= bash:shells/bash RUN_DEPENDS= bash:shells/bash USES= autoreconf gmake localbase perl5 python:env shebangfix USE_GITHUB= yes USE_PERL5= test GH_ACCOUNT= samtools GNU_CONFIGURE= yes SHEBANG_FILES= misc/* test/test.pl OPTIONS_DEFINE= GPL GPL_DESC= Enable modules that rely on GPL code OPTIONS_DEFAULT= GPL GPL_LIB_DEPENDS= libgsl.so:math/gsl .include .if ${PORT_OPTIONS:MGPL} MAKE_ENV+= USE_GPL=1 LICENSE+= GPLv3 LICENSE_COMB= multi .endif TEST_TARGET= test pre-configure: @${REINPLACE_CMD} -e 's|@PORTVERSION@|${PORTVERSION}|g' \ ${WRKSRC}/configure.ac post-install: ${MV} ${STAGEDIR}${PREFIX}/bin/color-chrs.pl \ ${STAGEDIR}${PREFIX}/bin/color-chrs ${MV} ${STAGEDIR}${PREFIX}/bin/guess-ploidy.py\ ${STAGEDIR}${PREFIX}/bin/guess-ploidy ${MV} /${STAGEDIR}${PREFIX}/bin/plot-roh.py \ ${STAGEDIR}${PREFIX}/bin/plot-roh ${MV} ${STAGEDIR}${PREFIX}/bin/run-roh.pl \ ${STAGEDIR}${PREFIX}/bin/run-roh ${MV} ${STAGEDIR}${PREFIX}/bin/vcfutils.pl \ ${STAGEDIR}${PREFIX}/bin/vcfutils ${MV} ${STAGEDIR}${PREFIX}/bin/plot-vcfstats \ ${STAGEDIR}${PREFIX}/bin/ .include diff --git a/biology/bcftools/distinfo b/biology/bcftools/distinfo index 204108d9af60..a1ea3b931e38 100644 --- a/biology/bcftools/distinfo +++ b/biology/bcftools/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1616112968 -SHA256 (samtools-bcftools-1.12_GH0.tar.gz) = b29e6d41ca0bb3f1761bee81be0c423329928a724a75501641c1ac5065d65526 -SIZE (samtools-bcftools-1.12_GH0.tar.gz) = 3048508 +TIMESTAMP = 1626039967 +SHA256 (samtools-bcftools-1.13_GH0.tar.gz) = 55fbc674ec69e243052e9fb6560eb43d06f45f210e1842ba4dbe33acb394e562 +SIZE (samtools-bcftools-1.13_GH0.tar.gz) = 3133637