diff --git a/science/packmol/Makefile b/science/packmol/Makefile index a591f8ec2a4b..1fa6a80a6993 100644 --- a/science/packmol/Makefile +++ b/science/packmol/Makefile @@ -1,19 +1,20 @@ PORTNAME= packmol -DISTVERSION= 18.169 -PORTREVISION= 1 +DISTVERSIONPREFIX= v +DISTVERSION= 20.15.3 CATEGORIES= science -MAINTAINER= jwb@FreeBSD.org -COMMENT= Pack molecules in defined regions of space -WWW= http://m3g.iqm.unicamp.br/packmol/home.shtml +MAINTAINER= ports@FreeBSD.org +COMMENT= Creates Initial Configurations for Molecular Dynamics Simulations +WWW= https://m3g.github.io/packmol/ \ + https://github.com/m3g/packmol/ LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE USES= cmake:noninja fortran USE_GITHUB= yes -GH_ACCOUNT= mcubeg +GH_ACCOUNT= m3g PLIST_FILES= bin/packmol .include diff --git a/science/packmol/distinfo b/science/packmol/distinfo index a598b7f167d4..08b9aca28e9e 100644 --- a/science/packmol/distinfo +++ b/science/packmol/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1563043114 -SHA256 (mcubeg-packmol-18.169_GH0.tar.gz) = 8acf2cbc742a609e763eb00cae55aecd09af2edb4cc4e931706e2f06ac380de9 -SIZE (mcubeg-packmol-18.169_GH0.tar.gz) = 169840 +TIMESTAMP = 1733943120 +SHA256 (m3g-packmol-v20.15.3_GH0.tar.gz) = a7e63208251c9e404437e3c58c976afc2e747d545c6c42dcfbf0e3e29c2c3d14 +SIZE (m3g-packmol-v20.15.3_GH0.tar.gz) = 629639 diff --git a/science/packmol/pkg-descr b/science/packmol/pkg-descr index acb1d3600884..20acf4963f80 100644 --- a/science/packmol/pkg-descr +++ b/science/packmol/pkg-descr @@ -1,3 +1,12 @@ -PACKMOL creates an initial point for molecular dynamics simulations by packing -molecules in defined regions of space. The packing guarantees that short range -repulsive interactions do not disrupt the simulations. +PACKMOL creates an initial point for molecular dynamics simulations by +packing molecules in defined regions of space. The packing guarantees +that short range repulsive interactions do not disrupt the +simulations. + +The package is compatible with input files of PDB, TINKER, XYZ and +MOLDY formats. + +See also: ComplexMixtures.jl: A powerful package to understand +solvation structures in complex solutions. CellListMap.jl: Efficient +and customizable cell list data structure for molecular simulations +and customizable simulation analysis. diff --git a/science/packmol/pkg-message b/science/packmol/pkg-message deleted file mode 100644 index 8ffd9e822894..000000000000 --- a/science/packmol/pkg-message +++ /dev/null @@ -1,10 +0,0 @@ -[ -{ type: install - message: <