diff --git a/biology/hyphy/Makefile b/biology/hyphy/Makefile
index 97bceda17ba2..2bd78e1e9925 100644
--- a/biology/hyphy/Makefile
+++ b/biology/hyphy/Makefile
@@ -1,27 +1,27 @@
 PORTNAME=	hyphy
-DISTVERSION=	2.5.60
+DISTVERSION=	2.5.61
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org
 COMMENT=	Hypothesis testing using Phylogenies
 WWW=		https://www.hyphy.org/
 
 LICENSE=	MIT
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 ONLY_FOR_ARCHS=	aarch64 amd64 i386 powerpc powerpc64 powerpc64le
 
 LIB_DEPENDS=	libcurl.so:ftp/curl
 TEST_DEPENDS=	bash:shells/bash
 
 USES=		cmake:insource,testing localbase:ldflags # tests fail in outsource build, see https://github.com/veg/hyphy/issues/1528
 
 USE_GITHUB=	yes
 GH_ACCOUNT=	veg
 
 OPTIONS_DEFINE=	AVX
 AVX_DESC=	Advanced vector extensions support
 
 AVX_CMAKE_OFF=	-DNOAVX:BOOL=ON
 
 .include <bsd.port.mk>
diff --git a/biology/hyphy/distinfo b/biology/hyphy/distinfo
index ebff1227db85..2129a0dda3e7 100644
--- a/biology/hyphy/distinfo
+++ b/biology/hyphy/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1713128763
-SHA256 (veg-hyphy-2.5.60_GH0.tar.gz) = bc3a5062ee3cee47de16c394189fb8a5feed48f9a8c12302432d6faa7f2ac301
-SIZE (veg-hyphy-2.5.60_GH0.tar.gz) = 5599910
+TIMESTAMP = 1715871637
+SHA256 (veg-hyphy-2.5.61_GH0.tar.gz) = 5a470ad64e9ea53296d87e69298ab2354d563338a9ec05b529679c42e23b3025
+SIZE (veg-hyphy-2.5.61_GH0.tar.gz) = 5604227