diff --git a/biology/iqtree/Makefile b/biology/iqtree/Makefile
index fc48fb410933..f6e6baf6de75 100644
--- a/biology/iqtree/Makefile
+++ b/biology/iqtree/Makefile
@@ -1,39 +1,38 @@
 PORTNAME=	iqtree
-DISTVERSIONPREFIX=	v.
-DISTVERSION=	2.3.4
+DISTVERSIONPREFIX=	v
+DISTVERSION =	2.3.5
 CATEGORIES=	biology
 
 MAINTAINER=	jrm@FreeBSD.org
 COMMENT=	Efficient phylogenomic software by maximum likelihood
 WWW=		http://www.iqtree.org/
 
 LICENSE=	GPLv2
 LICENSE_FILE=	${WRKSRC}/LICENSE
 
 BROKEN_aarch64=	fails to compile: unrecognized command line option '-msse3'
 BROKEN_armv6=	fails to compile: unrecognized command line options '-m32' and '-msse3'
 BROKEN_armv7=	fails to compile: unrecognized command line options '-m32' and '-msse3'
 BROKEN_i386=	ld: error: unable to find library -latomic (see bug 230888)
 BROKEN_powerpc64=	fails to build: GCC version must be at least 4.8!
 
 LIB_DEPENDS=	libboost_filesystem.so:devel/boost-libs
-
 USES=		cmake eigen:3
 USE_GITHUB=	yes
 GH_PROJECT=	iqtree2
-GH_TUPLE=	tothuhien:lsd2:26ba127:iqtree2/lsd2
+GH_TUPLE=	tothuhien:lsd2:125720d9da1281642053713d9b094d5bff2ce9cf:tothuhien/lsd2
 
 PLIST_FILES=	bin/iqtree
 PORTEXAMPLES=	custom_distributions.txt example.cf example.nex example.phy \
 		models.nex tree.nwk
 
 OPTIONS_DEFINE=	EXAMPLES
 
 do-install:
 	${INSTALL_PROGRAM} ${BUILD_WRKSRC}/iqtree2 ${STAGEDIR}${PREFIX}/bin/iqtree
 
 do-install-EXAMPLES-on:
 	@${MKDIR} ${STAGEDIR}${EXAMPLESDIR}
 	${INSTALL_DATA} ${WRKSRC}/example/* ${STAGEDIR}${EXAMPLESDIR}
 
 .include <bsd.port.mk>
diff --git a/biology/iqtree/distinfo b/biology/iqtree/distinfo
index ebd56f55dff4..d09831d11a5f 100644
--- a/biology/iqtree/distinfo
+++ b/biology/iqtree/distinfo
@@ -1,5 +1,5 @@
-TIMESTAMP = 1715872647
-SHA256 (iqtree-iqtree2-v.2.3.4_GH0.tar.gz) = 35bdac31c5795e5c72e532c2a311aa8266c9d40e7d668ee84c3b6e975af318da
-SIZE (iqtree-iqtree2-v.2.3.4_GH0.tar.gz) = 6568572
-SHA256 (tothuhien-lsd2-26ba127_GH0.tar.gz) = 63226da0e326d9fc47c54e8e380d48e51e923ccc25bd7f286d49b9f49028d1c4
-SIZE (tothuhien-lsd2-26ba127_GH0.tar.gz) = 1079490
+TIMESTAMP = 1719861931
+SHA256 (iqtree-iqtree2-v2.3.5_GH0.tar.gz) = 8e323e0b7c46e97901d3500f11e810703e0e5d25848188047eca9602d03fa6b1
+SIZE (iqtree-iqtree2-v2.3.5_GH0.tar.gz) = 6644556
+SHA256 (tothuhien-lsd2-125720d9da1281642053713d9b094d5bff2ce9cf_GH0.tar.gz) = acab6984ceeb1e1c45f87bfb30cadd18c29b48088912e80521e8c875ce33a50b
+SIZE (tothuhien-lsd2-125720d9da1281642053713d9b094d5bff2ce9cf_GH0.tar.gz) = 592579