diff --git a/biology/hisat2/Makefile b/biology/hisat2/Makefile index ae0ad38fbe7d..33d56578fcf8 100644 --- a/biology/hisat2/Makefile +++ b/biology/hisat2/Makefile @@ -1,26 +1,27 @@ PORTNAME= hisat2 DISTVERSIONPREFIX= v DISTVERSION= 2.2.1 +PORTREVISION= 1 CATEGORIES= biology perl5 python MAINTAINER= jwb@FreeBSD.org COMMENT= Alignment program for mapping next-generation sequencing reads LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE ONLY_FOR_ARCHS= amd64 ONLY_FOR_ARCHS_REASON= 64-bit code, some assembly language USES= gmake perl5 python shebangfix USE_GITHUB= yes SHEBANG_FILES= hisat2 hisat2-build hisat2-inspect \ *.py */*.py */*/*.py */*/*/*.py \ scripts/*.sh evaluation/tests/HLA_novel/scripts/*.sh \ scripts/*.pl docs_jhu/*.pl GH_ACCOUNT= DaehwanKimLab CFLAGS+= -Wno-deprecated-declarations -Wno-char-subscripts .include diff --git a/biology/hisat2/files/patch-util.h b/biology/hisat2/files/patch-util.h deleted file mode 100644 index 43c3aa88400c..000000000000 --- a/biology/hisat2/files/patch-util.h +++ /dev/null @@ -1,11 +0,0 @@ ---- util.h.orig 2021-11-26 15:40:17 UTC -+++ util.h -@@ -43,7 +43,7 @@ char* itoa10(const T& value, char* result) { - // Only apply negative sign for base 10 - if(std::numeric_limits::is_signed) { - // Avoid compiler warning in cases where T is unsigned -- if (value <= 0 && value != 0) *out++ = '-'; -+ if (value <= 0) *out++ = '-'; - } - reverse( result, out ); - *out = 0; // terminator