diff --git a/biology/minimap2/Makefile b/biology/minimap2/Makefile index 83084fd86a16..ff6799f92d2a 100644 --- a/biology/minimap2/Makefile +++ b/biology/minimap2/Makefile @@ -1,25 +1,25 @@ PORTNAME= minimap2 DISTVERSIONPREFIX= v -DISTVERSION= 2.24 +DISTVERSION= 2.25 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Pairwise aligner for genomic and spliced nucleotide sequences WWW= https://github.com/lh3/minimap2 LICENSE= MIT LICENSE_FILE= ${WRKSRC}/LICENSE.txt BUILD_DEPENDS= simde>0:devel/simde USES= gmake localbase USE_GITHUB= yes GH_ACCOUNT= lh3 ALL_TARGET= extra INSTALL_TARGET= install-strip MAKEFILE= Makefile.simde .include diff --git a/biology/minimap2/distinfo b/biology/minimap2/distinfo index 65cf355b10a5..7c79ce9501e2 100644 --- a/biology/minimap2/distinfo +++ b/biology/minimap2/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1640960772 -SHA256 (lh3-minimap2-v2.24_GH0.tar.gz) = 2e3264300661cf1fce6adabffe6970ec59d46f3e8150dd40fa4501ff4f6c0dbc -SIZE (lh3-minimap2-v2.24_GH0.tar.gz) = 253050 +TIMESTAMP = 1682729894 +SHA256 (lh3-minimap2-v2.25_GH0.tar.gz) = 9742ff0be01e51ea7d65f70c01d1344eee6f0d7b135359e0c00aec30fb74ac38 +SIZE (lh3-minimap2-v2.25_GH0.tar.gz) = 257574 diff --git a/biology/minimap2/pkg-descr b/biology/minimap2/pkg-descr index e4e8dbd749d9..d0a8f4d1b41d 100644 --- a/biology/minimap2/pkg-descr +++ b/biology/minimap2/pkg-descr @@ -1,16 +1,10 @@ Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: - (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome - (2) finding overlaps between long reads with error rate up to ~15% - (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA readsagainst a reference genome - (4) aligning Illumina single- or paired-end reads - (5) assembly-to-assembly alignment - (6) full-genome alignment between two closely related species with divergence below ~15%