diff --git a/science/Makefile b/science/Makefile index f41ec7bd287d..fd58073dc13c 100644 --- a/science/Makefile +++ b/science/Makefile @@ -1,465 +1,466 @@ COMMENT = Scientific ports SUBDIR += 2d-rewriter SUBDIR += ALPSCore SUBDIR += ChipmunkPhysics SUBDIR += InsightToolkit SUBDIR += PETSc SUBDIR += R-cran-AMORE SUBDIR += R-cran-DCluster SUBDIR += R-cran-Epi SUBDIR += R-cran-FAdist SUBDIR += R-cran-bayesm SUBDIR += R-cran-cmprsk SUBDIR += R-cran-e1071 SUBDIR += R-cran-eco SUBDIR += R-cran-epicalc SUBDIR += R-cran-etm SUBDIR += R-cran-fastICA SUBDIR += R-cran-kernlab SUBDIR += R-cran-ks SUBDIR += R-cran-snow SUBDIR += R-cran-som SUBDIR += R-cran-udunits2 SUBDIR += abinit SUBDIR += afni SUBDIR += agrum SUBDIR += aircraft-datcom SUBDIR += antioch SUBDIR += apbs SUBDIR += ascent SUBDIR += atompaw SUBDIR += avogadro2 SUBDIR += avogadrolibs SUBDIR += axom SUBDIR += bagel SUBDIR += bddsolve SUBDIR += berkeleygw SUBDIR += bodr SUBDIR += buddy SUBDIR += cantera SUBDIR += cardioid SUBDIR += cdcl SUBDIR += cdf SUBDIR += cdk SUBDIR += cdo SUBDIR += cgnslib SUBDIR += cgribex SUBDIR += checkmol SUBDIR += chemical-mime-data SUBDIR += chemicalfun SUBDIR += chemps2 SUBDIR += chemtool SUBDIR += chemtool-devel SUBDIR += chimes-calculator SUBDIR += chrono SUBDIR += clhep SUBDIR += clipper SUBDIR += code_saturne SUBDIR += colt SUBDIR += conduit SUBDIR += coordgenlibs SUBDIR += cp2k SUBDIR += cp2k-data SUBDIR += crf++ SUBDIR += csvtk SUBDIR += dakota SUBDIR += dalton SUBDIR += dcl SUBDIR += devisor SUBDIR += dftbplus SUBDIR += dftd4 SUBDIR += dimod SUBDIR += dirac SUBDIR += dkh SUBDIR += dlib-cpp SUBDIR += drawxtl SUBDIR += dvc SUBDIR += dwave-preprocessing SUBDIR += dynare SUBDIR += eccodes SUBDIR += elk SUBDIR += elmerfem SUBDIR += epte SUBDIR += erd SUBDIR += ergo SUBDIR += erkale SUBDIR += erkale-pseudopotentials SUBDIR += fastcap SUBDIR += fasthenry SUBDIR += fastjet SUBDIR += fisicalab SUBDIR += fleur SUBDIR += frontistr SUBDIR += fsom SUBDIR += fvcom SUBDIR += fvcom-mpi SUBDIR += gabedit SUBDIR += gamess-us SUBDIR += gbtolib SUBDIR += gchemutils SUBDIR += gdma SUBDIR += getdp SUBDIR += ghemical SUBDIR += ghmm SUBDIR += gnudatalanguage SUBDIR += gpaw-setups SUBDIR += gramps SUBDIR += grib_api SUBDIR += gromacs SUBDIR += gsmc SUBDIR += gtamsanalyzer SUBDIR += h5utils SUBDIR += h5z-zfp SUBDIR += harminv SUBDIR += hdf SUBDIR += hdf5 SUBDIR += hdf5-110 SUBDIR += hdf5-18 SUBDIR += healpix SUBDIR += helfem SUBDIR += hepmc3 SUBDIR += highfive SUBDIR += hypre SUBDIR += iboview SUBDIR += isaac-cfd SUBDIR += jdftx SUBDIR += jmol SUBDIR += jstrack SUBDIR += kalzium SUBDIR += kim-api SUBDIR += kplib SUBDIR += kst2 SUBDIR += lammps SUBDIR += lamprop SUBDIR += latte SUBDIR += libaec SUBDIR += libccp4 SUBDIR += libcint SUBDIR += libctl SUBDIR += libecpint SUBDIR += libefp SUBDIR += libgeodecomp SUBDIR += libgetar SUBDIR += libghemical SUBDIR += libgridxc SUBDIR += libint SUBDIR += libint2 SUBDIR += libkml SUBDIR += liblinear SUBDIR += libmbd SUBDIR += libmsym SUBDIR += libnegf SUBDIR += liboglappth SUBDIR += libquantum SUBDIR += libssm SUBDIR += libsvm SUBDIR += libsvm-python SUBDIR += libtensorflow1 SUBDIR += libvdwxc SUBDIR += libxc SUBDIR += liggghts SUBDIR += linux-zotero SUBDIR += luscus SUBDIR += madness SUBDIR += maeparser SUBDIR += massxpert SUBDIR += mbdyn SUBDIR += mcstas SUBDIR += mcstas-comps SUBDIR += mctc-lib SUBDIR += mcxtrace SUBDIR += mcxtrace-comps SUBDIR += mdynamix SUBDIR += medit SUBDIR += meep SUBDIR += metaphysicl SUBDIR += minc2 SUBDIR += mmdb2 SUBDIR += mmtf-cpp SUBDIR += mol2ps SUBDIR += molgif SUBDIR += molscript SUBDIR += molsketch SUBDIR += mopac SUBDIR += mpb SUBDIR += mpqc SUBDIR += msms SUBDIR += mstore SUBDIR += multicharge SUBDIR += multiwfn SUBDIR += namd SUBDIR += nest SUBDIR += netcdf SUBDIR += netcdf-cxx SUBDIR += netcdf-fortran SUBDIR += nifticlib SUBDIR += nlcglib SUBDIR += nwchem SUBDIR += nwchem-data SUBDIR += octopus SUBDIR += openbabel SUBDIR += openems SUBDIR += openkim-models SUBDIR += openmc SUBDIR += openmolcas SUBDIR += openmx SUBDIR += opensim-core SUBDIR += opensph SUBDIR += opsin SUBDIR += orthanc SUBDIR += orthanc-dicomweb SUBDIR += orthanc-mysql SUBDIR += orthanc-postgresql SUBDIR += orthanc-webviewer SUBDIR += p5-Algorithm-SVMLight SUBDIR += p5-Chemistry-3DBuilder SUBDIR += p5-Chemistry-Bond-Find SUBDIR += p5-Chemistry-Canonicalize SUBDIR += p5-Chemistry-Elements SUBDIR += p5-Chemistry-File-MDLMol SUBDIR += p5-Chemistry-File-Mopac SUBDIR += p5-Chemistry-File-PDB SUBDIR += p5-Chemistry-File-SLN SUBDIR += p5-Chemistry-File-SMARTS SUBDIR += p5-Chemistry-File-SMILES SUBDIR += p5-Chemistry-File-VRML SUBDIR += p5-Chemistry-File-XYZ SUBDIR += p5-Chemistry-FormulaPattern SUBDIR += p5-Chemistry-InternalCoords SUBDIR += p5-Chemistry-Isotope SUBDIR += p5-Chemistry-MacroMol SUBDIR += p5-Chemistry-MidasPattern SUBDIR += p5-Chemistry-Mok SUBDIR += p5-Chemistry-Mol SUBDIR += p5-Chemistry-Pattern SUBDIR += p5-Chemistry-Reaction SUBDIR += p5-Chemistry-Ring SUBDIR += p5-Geo-BUFR SUBDIR += p5-Geo-Coordinates-Converter SUBDIR += p5-Geo-Coordinates-Converter-iArea SUBDIR += p5-Geo-WebService-Elevation-USGS SUBDIR += p5-Mcstas-Tools SUBDIR += p5-PerlMol SUBDIR += p5-Physics-Unit SUBDIR += packmol SUBDIR += pagmo2 SUBDIR += paje SUBDIR += paraview SUBDIR += pastix SUBDIR += pcmsolver SUBDIR += phonopy SUBDIR += plumed SUBDIR += pnetcdf SUBDIR += precice SUBDIR += pulseview SUBDIR += py-DendroPy SUBDIR += py-GPy SUBDIR += py-GPyOpt SUBDIR += py-MDAnalysis SUBDIR += py-MDAnalysisTests SUBDIR += py-OpenFermion SUBDIR += py-OpenFermion-Dirac SUBDIR += py-OpenFermion-PySCF SUBDIR += py-OpenMC SUBDIR += py-PubChemPy SUBDIR += py-PyFR SUBDIR += py-PyNE SUBDIR += py-SimpleSpectral SUBDIR += py-abipy SUBDIR += py-access SUBDIR += py-asap3 SUBDIR += py-asdf SUBDIR += py-asdf-standard SUBDIR += py-asdf-transform-schemas SUBDIR += py-ase SUBDIR += py-avogadrolibs SUBDIR += py-cdo SUBDIR += py-chainer SUBDIR += py-chainer-chemistry SUBDIR += py-chempy SUBDIR += py-cirq-aqt SUBDIR += py-cirq-core SUBDIR += py-cirq-google SUBDIR += py-cirq-ionq SUBDIR += py-cirq-pasqal SUBDIR += py-cirq-rigetti SUBDIR += py-coards SUBDIR += py-dimod SUBDIR += py-dipy SUBDIR += py-dlib SUBDIR += py-dwave-cloud-client SUBDIR += py-dwave-greedy SUBDIR += py-dwave-hybrid SUBDIR += py-dwave-inspector SUBDIR += py-dwave-neal SUBDIR += py-dwave-networkx SUBDIR += py-dwave-ocean-sdk SUBDIR += py-dwave-preprocessing SUBDIR += py-dwave-samplers SUBDIR += py-dwave-system SUBDIR += py-dwave-tabu SUBDIR += py-dwavebinarycsp SUBDIR += py-eccodes SUBDIR += py-esda SUBDIR += py-fresnel SUBDIR += py-geolinks SUBDIR += py-geomet SUBDIR += py-geometer SUBDIR += py-geometric SUBDIR += py-gpaw SUBDIR += py-gsd SUBDIR += py-h5json SUBDIR += py-h5py SUBDIR += py-hiphive SUBDIR += py-hoomd-blue SUBDIR += py-inequality SUBDIR += py-jupyter_jsmol SUBDIR += py-kim-query SUBDIR += py-kinematics SUBDIR += py-kliff SUBDIR += py-kpLib SUBDIR += py-liac-arff SUBDIR += py-libgetar SUBDIR += py-libpysal SUBDIR += py-lifelines SUBDIR += py-mdp SUBDIR += py-mmtf-python SUBDIR += py-molmod SUBDIR += py-moltemplate SUBDIR += py-netCDF4 SUBDIR += py-netcdf-flattener SUBDIR += py-nibabel SUBDIR += py-nilearn SUBDIR += py-obspy SUBDIR += py-oddt SUBDIR += py-openpiv SUBDIR += py-paida SUBDIR += py-paramz SUBDIR += py-penaltymodel SUBDIR += py-phono3py SUBDIR += py-phonopy SUBDIR += py-pupynere SUBDIR += py-py3Dmol SUBDIR += py-pyaixi SUBDIR += py-pyberny SUBDIR += py-pycsw SUBDIR += py-pydicom SUBDIR += py-pygeodesy SUBDIR += py-pygeometa SUBDIR += py-pygmo2 SUBDIR += py-pyked SUBDIR += py-pymatgen SUBDIR += py-pymbd SUBDIR += py-pymol SUBDIR += py-pyosf SUBDIR += py-pyprecice SUBDIR += py-pyqubo SUBDIR += py-pysal SUBDIR += py-pyscf SUBDIR += py-pyteomics SUBDIR += py-qcelemental SUBDIR += py-qcengine SUBDIR += py-qiskit SUBDIR += py-qiskit-aer SUBDIR += py-qiskit-experiments SUBDIR += py-qiskit-finance SUBDIR += py-qiskit-ibm-experiment SUBDIR += py-qiskit-ibm-provider SUBDIR += py-qiskit-ibmq-provider SUBDIR += py-qiskit-nature SUBDIR += py-qiskit-optimization SUBDIR += py-qiskit-terra SUBDIR += py-qspin SUBDIR += py-quantities SUBDIR += py-rmf SUBDIR += py-rmsd SUBDIR += py-ruffus SUBDIR += py-scikit-fuzzy SUBDIR += py-scikit-learn SUBDIR += py-scikit-optimize SUBDIR += py-scikit-sparse SUBDIR += py-scimath SUBDIR += py-scipy SUBDIR += py-scoria SUBDIR += py-segregation SUBDIR += py-segyio SUBDIR += py-sklearn-pandas SUBDIR += py-skrebate SUBDIR += py-spaghetti SUBDIR += py-spglib SUBDIR += py-tensorflow SUBDIR += py-thewalrus SUBDIR += py-tobler SUBDIR += py-trainstation SUBDIR += py-tweedledum SUBDIR += py-veusz SUBDIR += pybrain SUBDIR += pynn SUBDIR += q SUBDIR += qbox SUBDIR += qcl SUBDIR += qiskit-aer SUBDIR += qmcpack SUBDIR += quantum-espresso SUBDIR += quantum-espresso-pseudopotentials SUBDIR += quantum-jet SUBDIR += qwalk SUBDIR += rdkit SUBDIR += rmf SUBDIR += rubygem-ai4r SUBDIR += rubygem-cdo SUBDIR += rubygem-rgeo SUBDIR += rubygem-rgeo-geojson SUBDIR += rubygem-rgeo-proj4 SUBDIR += rubygem-rgeo-shapefile SUBDIR += rubygem-ruby-dcl SUBDIR += rubygem-ruby-netcdf SUBDIR += scidavis SUBDIR += segyio + SUBDIR += serac SUBDIR += shelxle SUBDIR += siconos SUBDIR += siesta SUBDIR += sigrok-cli SUBDIR += sigrok-firmware SUBDIR += sigrok-firmware-fx2lafw SUBDIR += sigrok-firmware-utils SUBDIR += silo SUBDIR += simbody SUBDIR += simgrid SUBDIR += simint SUBDIR += simlib SUBDIR += simple-dftd3 SUBDIR += simsmith SUBDIR += sirius SUBDIR += smoldyn SUBDIR += sparta SUBDIR += spglib SUBDIR += step SUBDIR += svmlight SUBDIR += tblite SUBDIR += teem SUBDIR += tfel SUBDIR += tfel-edf SUBDIR += thermofun SUBDIR += tinker SUBDIR += trilinos SUBDIR += tweedledum SUBDIR += udunits SUBDIR += ukrmol+ SUBDIR += v_sim SUBDIR += vipster SUBDIR += vmd SUBDIR += voro++ SUBDIR += votca SUBDIR += wannier90 SUBDIR += wwplot SUBDIR += wxmacmolplt SUBDIR += xcfun SUBDIR += xcrysden SUBDIR += xdrawchem SUBDIR += xtb SUBDIR += yoda SUBDIR += zotero .include diff --git a/science/serac/Makefile b/science/serac/Makefile new file mode 100644 index 000000000000..aa6870216062 --- /dev/null +++ b/science/serac/Makefile @@ -0,0 +1,52 @@ +PORTNAME= serac +PORTVERSION= g20220823 +CATEGORIES= science + +MAINTAINER= yuri@FreeBSD.org +COMMENT= High order nonlinear thermomechanical simulation code + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/LICENSE + +LIB_DEPENDS= libaxom.so:science/axom \ + libconduit.so:science/conduit \ + libhdf5.so:science/hdf5 \ + libHYPRE.so:science/hypre \ + libmfem.so:math/mfem \ + libsiloh5.so:science/silo + +USES= cmake:testing compiler:c++17-lang +USE_LDCONFIG= yes + +USE_GITHUB= yes +GH_ACCOUNT= LLNL +GH_TAGNAME= 07b8ef1 +GH_TUPLE= LLNL:blt:49971b88e631aba76a9990c7702ceee47a7c3216:LLNL_blt/cmake/blt \ + LLNL:uberenv:2cd030dd8fa9ff381900bfbe12fe1eea44a57bb5:LLNL_uberenv/scripts/uberenv \ + LLNL:serac_tests:2fee9739eadeb218e99f7f5549e0800df81ca757:LLNL_serac_tests/tests + +CMAKE_TESTING_ON= ENABLE_TESTS # tests fail to compile, see https://github.com/LLNL/serac/issues/786 + +CMAKE_ON= BUILD_SHARED_LIBS +CMAKE_OFF= ENABLE_TESTS +CMAKE_ARGS= -DAXOM_DIR=${LOCALBASE} \ + -DCONDUIT_DIR=${LOCALBASE} \ + -DMFEM_DIR=${LOCALBASE} + +OPTIONS_SINGLE= MPI +OPTIONS_SINGLE_MPI= MPICH OPENMPI +OPTIONS_DEFAULT= MPICH +OPTIONS_SUB= yes + +MPICH_USES= mpi:mpich +MPICH_CMAKE_ON= -DENABLE_MPI=ON \ + -DMPI_C_COMPILER=${MPICC} \ + -DMPI_CXX_COMPILER=${MPICXX} + +OPENMPI_USES= mpi:openmpi +OPENMPI_CMAKE_ON= -DENABLE_MPI=ON \ + -DMPI_C_COMPILER=${MPICC} \ + -DMPI_CXX_COMPILER=${MPICXX} +OPENMPI_BROKEN= mixes OpenMPI and MPICH when both are installed, see https://github.com/LLNL/serac/issues/787 + +.include diff --git a/science/serac/distinfo b/science/serac/distinfo new file mode 100644 index 000000000000..ab991e9f6eb8 --- /dev/null +++ b/science/serac/distinfo @@ -0,0 +1,9 @@ +TIMESTAMP = 1662358186 +SHA256 (LLNL-serac-g20220823-07b8ef1_GH0.tar.gz) = 687bfc578b6b1ba30d13ac973977f2cd31c92baa7539dbabd2d71c7b99759a51 +SIZE (LLNL-serac-g20220823-07b8ef1_GH0.tar.gz) = 5513337 +SHA256 (LLNL-blt-49971b88e631aba76a9990c7702ceee47a7c3216_GH0.tar.gz) = 456a70fa20ab6859fa7dad80646bd3e5ba39e195f31fe00519beea21622c3c61 +SIZE (LLNL-blt-49971b88e631aba76a9990c7702ceee47a7c3216_GH0.tar.gz) = 1216333 +SHA256 (LLNL-uberenv-2cd030dd8fa9ff381900bfbe12fe1eea44a57bb5_GH0.tar.gz) = 939b597b84afffc1210c61d0fb3a9705696c398d871eda83ccef3bd68381eaf7 +SIZE (LLNL-uberenv-2cd030dd8fa9ff381900bfbe12fe1eea44a57bb5_GH0.tar.gz) = 25837 +SHA256 (LLNL-serac_tests-2fee9739eadeb218e99f7f5549e0800df81ca757_GH0.tar.gz) = 0bcd3ad11b117da20362b8b6187e5ff16100a7058a200230fff7758c4d93cd14 +SIZE (LLNL-serac_tests-2fee9739eadeb218e99f7f5549e0800df81ca757_GH0.tar.gz) = 17539 diff --git a/science/serac/files/patch-src_serac_infrastructure_tests_serac__profiling.cpp b/science/serac/files/patch-src_serac_infrastructure_tests_serac__profiling.cpp new file mode 100644 index 000000000000..5878566711fb --- /dev/null +++ b/science/serac/files/patch-src_serac_infrastructure_tests_serac__profiling.cpp @@ -0,0 +1,10 @@ +--- src/serac/infrastructure/tests/serac_profiling.cpp.orig 2022-09-05 06:58:55 UTC ++++ src/serac/infrastructure/tests/serac_profiling.cpp +@@ -4,6 +4,7 @@ + // + // SPDX-License-Identifier: (BSD-3-Clause) + ++#include + #include + #include + diff --git a/science/serac/files/patch-src_serac_numerics_functional_functional.hpp b/science/serac/files/patch-src_serac_numerics_functional_functional.hpp new file mode 100644 index 000000000000..4cae7b80f6f3 --- /dev/null +++ b/science/serac/files/patch-src_serac_numerics_functional_functional.hpp @@ -0,0 +1,11 @@ +--- src/serac/numerics/functional/functional.hpp.orig 2022-09-05 06:55:45 UTC ++++ src/serac/numerics/functional/functional.hpp +@@ -23,6 +23,8 @@ + #include "serac/numerics/functional/boundary_integral.hpp" + #include "serac/numerics/functional/dof_numbering.hpp" + ++#include ++ + namespace serac { + + template diff --git a/science/serac/pkg-descr b/science/serac/pkg-descr new file mode 100644 index 000000000000..1c47ed569d54 --- /dev/null +++ b/science/serac/pkg-descr @@ -0,0 +1,7 @@ +Serac is a 3D implicit nonlinear thermal-structural simulation code. Its primary +purpose is to investigate multiphysics abstraction strategies and implicit +finite element-based algorithm development for emerging computing architectures. +It also serves as a proxy-app for LLNL's Smith code and heavily leverages the +MFEM finite element library. + +WWW: https://github.com/LLNL/serac diff --git a/science/serac/pkg-plist b/science/serac/pkg-plist new file mode 100644 index 000000000000..830d25fe8601 --- /dev/null +++ b/science/serac/pkg-plist @@ -0,0 +1,99 @@ +bin/serac +examples/serac/simple_conduction/conduction.lua +examples/serac/simple_conduction/with_input_file.cpp +examples/serac/simple_conduction/without_input_file.cpp +examples/serac/using-with-cmake/CMakeLists.txt +examples/serac/using-with-cmake/host-config.cmake +examples/serac/using-with-cmake/serac_example.cpp +include/serac/infrastructure/about.hpp +include/serac/infrastructure/accelerator.hpp +include/serac/infrastructure/cli.hpp +include/serac/infrastructure/git_sha.hpp +include/serac/infrastructure/initialize.hpp +include/serac/infrastructure/input.hpp +include/serac/infrastructure/logger.hpp +include/serac/infrastructure/output.hpp +include/serac/infrastructure/profiling.hpp +include/serac/infrastructure/terminator.hpp +include/serac/infrastructure/variant.hpp +include/serac/mesh/mesh_utils.hpp +include/serac/mesh/mesh_utils_base.hpp +include/serac/numerics/equation_solver.hpp +include/serac/numerics/expr_template_impl.hpp +include/serac/numerics/expr_template_ops.hpp +include/serac/numerics/functional/boundary_integral.hpp +include/serac/numerics/functional/boundary_integral_kernels.hpp +include/serac/numerics/functional/detail/hexahedron_H1.inl +include/serac/numerics/functional/detail/hexahedron_Hcurl.inl +include/serac/numerics/functional/detail/hexahedron_L2.inl +include/serac/numerics/functional/detail/metaprogramming.hpp +include/serac/numerics/functional/detail/qoi.inl +include/serac/numerics/functional/detail/quadrilateral_H1.inl +include/serac/numerics/functional/detail/quadrilateral_Hcurl.inl +include/serac/numerics/functional/detail/quadrilateral_L2.inl +include/serac/numerics/functional/detail/segment_H1.inl +include/serac/numerics/functional/detail/segment_Hcurl.inl +include/serac/numerics/functional/detail/segment_L2.inl +include/serac/numerics/functional/dof_numbering.hpp +include/serac/numerics/functional/domain_integral.hpp +include/serac/numerics/functional/domain_integral_kernels.hpp +include/serac/numerics/functional/dual.hpp +include/serac/numerics/functional/evector_view.hpp +include/serac/numerics/functional/finite_element.hpp +include/serac/numerics/functional/functional.hpp +include/serac/numerics/functional/functional_qoi.inl +include/serac/numerics/functional/integral_utilities.hpp +include/serac/numerics/functional/isotropic_tensor.hpp +include/serac/numerics/functional/polynomials.hpp +include/serac/numerics/functional/quadrature.hpp +include/serac/numerics/functional/tensor.hpp +include/serac/numerics/functional/tuple.hpp +include/serac/numerics/functional/tuple_arithmetic.hpp +include/serac/numerics/odes.hpp +include/serac/numerics/quadrature_data.hpp +include/serac/numerics/solver_config.hpp +include/serac/numerics/stdfunction_operator.hpp +include/serac/numerics/vector_expression.hpp +include/serac/physics/base_physics.hpp +include/serac/physics/boundary_conditions/boundary_condition.hpp +include/serac/physics/boundary_conditions/boundary_condition_helper.hpp +include/serac/physics/boundary_conditions/boundary_condition_manager.hpp +include/serac/physics/coefficients/coefficient_extensions.hpp +include/serac/physics/coefficients/loading_functions.hpp +include/serac/physics/coefficients/sensitivity_coefficients.hpp +include/serac/physics/integrators/displacement_hyperelastic_integrator.hpp +include/serac/physics/integrators/nonlinear_reaction_integrator.hpp +include/serac/physics/integrators/traction_integrator.hpp +include/serac/physics/integrators/wrapper_integrator.hpp +include/serac/physics/materials/functional_material_utils.hpp +include/serac/physics/materials/hyperelastic_material.hpp +include/serac/physics/materials/parameterized_solid_functional_material.hpp +include/serac/physics/materials/parameterized_thermal_functional_material.hpp +include/serac/physics/materials/solid_functional_material.hpp +include/serac/physics/materials/solid_utils.hpp +include/serac/physics/materials/thermal_expansion_material.hpp +include/serac/physics/materials/thermal_functional_material.hpp +include/serac/physics/solid.hpp +include/serac/physics/solid_functional.hpp +include/serac/physics/state/finite_element_dual.hpp +include/serac/physics/state/finite_element_state.hpp +include/serac/physics/state/finite_element_vector.hpp +include/serac/physics/state/state_manager.hpp +include/serac/physics/thermal_conduction.hpp +include/serac/physics/thermal_conduction_functional.hpp +include/serac/physics/thermal_mechanics_functional.hpp +include/serac/physics/thermal_solid.hpp +include/serac/serac_config.hpp +lib/cmake/serac-config-version.cmake +lib/cmake/serac-config.cmake +lib/cmake/serac-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/serac-targets.cmake +lib/libserac_boundary_conditions.so +lib/libserac_coefficients.so +lib/libserac_infrastructure.so +lib/libserac_mesh.so +lib/libserac_numerics.so +lib/libserac_physics.so +lib/libserac_physics_integrators.so +lib/libserac_physics_materials.so +lib/libserac_state.so