diff --git a/biology/star/Makefile b/biology/star/Makefile index 07a68f031873..fc32ddebc58b 100644 --- a/biology/star/Makefile +++ b/biology/star/Makefile @@ -1,47 +1,47 @@ PORTNAME= STAR DISTVERSION= 2.7.10b CATEGORIES= biology PKGNAMEPREFIX= rna- MAINTAINER= jwb@FreeBSD.org COMMENT= Spliced Transcripts Alignment to a Reference WWW= https://github.com/alexdobin/STAR LICENSE= GPLv3 LICENSE_FILE= ${WRKDIR}/STAR-${DISTVERSION}/LICENSE -NOT_FOR_ARCHS= i386 powerpc -NOT_FOR_ARCHS_REASON=Needs 16+ GiB RAM for typical eukaryotic genome +NOT_FOR_ARCHS= armv6 armv7 i386 mips powerpc powerpcspe +NOT_FOR_ARCHS_REASON= Requires 64-bit processor .if !exists(/usr/include/omp.h) BROKEN= requires OpenMP support that is missing on this architecture .endif LIB_DEPENDS= libhts.so:biology/htslib USES= compiler:c++11-lang gmake localbase:ldflags USE_GITHUB= yes GH_ACCOUNT= alexdobin WRKSRC_SUBDIR= source MAKE_FLAGS= HTSLIB='' PLIST_FILES= bin/STAR post-patch: ${RM} -rf ${WRKSRC}/htslib ${REINPLACE_CMD} \ -e 's|"htslib/htslib/sam.h"||g' \ -e 's|"htslib/htslib/kstring.h"||g' \ -e 's|"htslib/htslib/bgzf.h"||g' \ ${WRKSRC}/BAMfunctions.cpp \ ${WRKSRC}/IncludeDefine.h \ ${WRKSRC}/STAR.cpp \ ${WRKSRC}/bamRemoveDuplicates.cpp \ ${WRKSRC}/bam_cat.c \ ${WRKSRC}/bam_cat.h \ ${WRKSRC}/signalFromBAM.h do-install: ${INSTALL_PROGRAM} ${WRKSRC}/STAR ${STAGEDIR}${PREFIX}/bin .include