diff --git a/math/Makefile b/math/Makefile index bfc7f4174ba4..1e1c7edae124 100644 --- a/math/Makefile +++ b/math/Makefile @@ -1,916 +1,917 @@ # $FreeBSD$ # COMMENT = Mathematics SUBDIR += 4ti2 SUBDIR += GiNaC SUBDIR += PDL SUBDIR += R SUBDIR += R-cran-ADGofTest SUBDIR += R-cran-Amelia SUBDIR += R-cran-BsMD SUBDIR += R-cran-CVST SUBDIR += R-cran-ChangeAnomalyDetection SUBDIR += R-cran-DEoptimR SUBDIR += R-cran-DRR SUBDIR += R-cran-DoE.base SUBDIR += R-cran-Formula SUBDIR += R-cran-FrF2 SUBDIR += R-cran-KFAS SUBDIR += R-cran-LearnBayes SUBDIR += R-cran-MCMCpack SUBDIR += R-cran-MSwM SUBDIR += R-cran-MatchIt SUBDIR += R-cran-Matching SUBDIR += R-cran-MatrixModels SUBDIR += R-cran-NMF SUBDIR += R-cran-RHmm SUBDIR += R-cran-RSvgDevice SUBDIR += R-cran-RcppArmadillo SUBDIR += R-cran-RcppEigen SUBDIR += R-cran-RcppRoll SUBDIR += R-cran-Rmpfr SUBDIR += R-cran-Rsolnp SUBDIR += R-cran-SQUAREM SUBDIR += R-cran-SparseM SUBDIR += R-cran-VGAM SUBDIR += R-cran-Zelig SUBDIR += R-cran-acepack SUBDIR += R-cran-alabama SUBDIR += R-cran-assertthat SUBDIR += R-cran-backports SUBDIR += R-cran-bdsmatrix SUBDIR += R-cran-car SUBDIR += R-cran-carData SUBDIR += R-cran-coda SUBDIR += R-cran-combinat SUBDIR += R-cran-conf.design SUBDIR += R-cran-ddalpha SUBDIR += R-cran-deldir SUBDIR += R-cran-dimRed SUBDIR += R-cran-dlmodeler SUBDIR += R-cran-dplyr SUBDIR += R-cran-expm SUBDIR += R-cran-forcats SUBDIR += R-cran-forecast SUBDIR += R-cran-fracdiff SUBDIR += R-cran-geepack SUBDIR += R-cran-geometry SUBDIR += R-cran-gmp SUBDIR += R-cran-gower SUBDIR += R-cran-gpclib SUBDIR += R-cran-gss SUBDIR += R-cran-gtable SUBDIR += R-cran-haven SUBDIR += R-cran-igraph SUBDIR += R-cran-influenceR SUBDIR += R-cran-inline SUBDIR += R-cran-ipred SUBDIR += R-cran-irlba SUBDIR += R-cran-labeling SUBDIR += R-cran-lava SUBDIR += R-cran-lazyeval SUBDIR += R-cran-lme4 SUBDIR += R-cran-magic SUBDIR += R-cran-maxLik SUBDIR += R-cran-mcmc SUBDIR += R-cran-memisc SUBDIR += R-cran-minqa SUBDIR += R-cran-miscTools SUBDIR += R-cran-mitools SUBDIR += R-cran-mvtnorm SUBDIR += R-cran-nloptr SUBDIR += R-cran-nnls SUBDIR += R-cran-nortest SUBDIR += R-cran-numDeriv SUBDIR += R-cran-numbers SUBDIR += R-cran-outliers SUBDIR += R-cran-partitions SUBDIR += R-cran-pbkrtest SUBDIR += R-cran-pls SUBDIR += R-cran-polynom SUBDIR += R-cran-prodlim SUBDIR += R-cran-psych SUBDIR += R-cran-quadprog SUBDIR += R-cran-qualityTools SUBDIR += R-cran-quantreg SUBDIR += R-cran-recipes SUBDIR += R-cran-rgenoud SUBDIR += R-cran-robustbase SUBDIR += R-cran-sandwich SUBDIR += R-cran-scatterplot3d SUBDIR += R-cran-sets SUBDIR += R-cran-sf SUBDIR += R-cran-sm SUBDIR += R-cran-sp SUBDIR += R-cran-spData SUBDIR += R-cran-spdep SUBDIR += R-cran-sspir SUBDIR += R-cran-stabledist SUBDIR += R-cran-statmod SUBDIR += R-cran-survey SUBDIR += R-cran-truncnorm SUBDIR += R-cran-units SUBDIR += R-cran-uroot SUBDIR += R-cran-xts SUBDIR += R-cran-zoo SUBDIR += SCIP SUBDIR += SoPlex SUBDIR += aamath SUBDIR += abella SUBDIR += abs SUBDIR += acalc SUBDIR += add SUBDIR += adept SUBDIR += adol-c SUBDIR += algae SUBDIR += alglib SUBDIR += alt-ergo SUBDIR += amath SUBDIR += ambit SUBDIR += analitza SUBDIR += ann SUBDIR += antic SUBDIR += apache-commons-math SUBDIR += apc SUBDIR += apron SUBDIR += arb SUBDIR += aribas SUBDIR += armadillo SUBDIR += arpack++ SUBDIR += arpack-ng SUBDIR += ascent SUBDIR += aspcud SUBDIR += asymptote SUBDIR += atlas SUBDIR += barvinok SUBDIR += bcal SUBDIR += bitwise SUBDIR += blacs SUBDIR += blas SUBDIR += blasfeo SUBDIR += blaze SUBDIR += blazeiterative SUBDIR += blis SUBDIR += blitz++ SUBDIR += blocksolve95 SUBDIR += bonmin SUBDIR += boolector SUBDIR += bsdnt SUBDIR += btor2tools SUBDIR += cadabra2 SUBDIR += cadical SUBDIR += calc SUBDIR += calcoo SUBDIR += calctool SUBDIR += cantor SUBDIR += casadi SUBDIR += cbc SUBDIR += cblas SUBDIR += ccmath SUBDIR += cddlib SUBDIR += ceres-solver SUBDIR += cgal SUBDIR += cgl SUBDIR += chaco SUBDIR += chryzodus SUBDIR += clasp SUBDIR += clblas SUBDIR += clblast SUBDIR += clfft SUBDIR += clingo SUBDIR += cln SUBDIR += cloog SUBDIR += clp SUBDIR += clrng SUBDIR += cminpack SUBDIR += cmlib SUBDIR += cocoalib SUBDIR += coin-or-data-netlib SUBDIR += coin-or-data-sample SUBDIR += coin-or-data-stochastic SUBDIR += coinmp SUBDIR += coinutils SUBDIR += combblas SUBDIR += concorde SUBDIR += convertall SUBDIR += coq SUBDIR += couenne SUBDIR += cppad SUBDIR += crlibm SUBDIR += cryptominisat SUBDIR += csdp SUBDIR += ctl-sat SUBDIR += curv SUBDIR += cvc3 SUBDIR += cvc4 SUBDIR += darknet SUBDIR += dbcsr SUBDIR += deal.ii SUBDIR += diehard SUBDIR += dieharder SUBDIR += djbfft SUBDIR += drgeo SUBDIR += dsdp + SUBDIR += dune-common SUBDIR += e SUBDIR += ecos SUBDIR += edenmath SUBDIR += eigen2 SUBDIR += eigen3 SUBDIR += eispack SUBDIR += elpa SUBDIR += emc2 SUBDIR += ensmallen SUBDIR += ent SUBDIR += entropy SUBDIR += eprover SUBDIR += ess SUBDIR += eukleides SUBDIR += eval SUBDIR += exprtk SUBDIR += facile SUBDIR += fann SUBDIR += fcl SUBDIR += fflas-ffpack SUBDIR += fftw SUBDIR += fftw-float SUBDIR += fftw3 SUBDIR += fftw3-float SUBDIR += fftw3-long SUBDIR += fftw3-quad SUBDIR += flann SUBDIR += flint2 SUBDIR += flintqs SUBDIR += form SUBDIR += fpc-fftw SUBDIR += fpc-gmp SUBDIR += fpc-numlib SUBDIR += fplll SUBDIR += fricas SUBDIR += frobby SUBDIR += fxt SUBDIR += g2o SUBDIR += galculator SUBDIR += gambit SUBDIR += gap SUBDIR += gau2grid SUBDIR += gemmlowp SUBDIR += geogebra SUBDIR += geogram SUBDIR += geonext SUBDIR += gexpr SUBDIR += gfan SUBDIR += gfanlib SUBDIR += ggobi SUBDIR += gh-bc SUBDIR += giacxcas SUBDIR += givaro SUBDIR += gkmap SUBDIR += glgraph SUBDIR += glm SUBDIR += glpk SUBDIR += glucose SUBDIR += gmm++ SUBDIR += gmp SUBDIR += gmp-ecm SUBDIR += gnome-calculator SUBDIR += gnubc SUBDIR += gnumeric SUBDIR += gnuplot SUBDIR += gnuplot-lite SUBDIR += gnuplot-tex-extras SUBDIR += gotoblas SUBDIR += grace SUBDIR += graphthing SUBDIR += gretl SUBDIR += gri SUBDIR += gringo SUBDIR += grpn SUBDIR += gsl SUBDIR += hexcalc SUBDIR += hipmcl SUBDIR += hmat-oss SUBDIR += hpipm SUBDIR += hs-Agda SUBDIR += hs-penrose SUBDIR += hs-semigroups SUBDIR += ideep SUBDIR += ignition-math SUBDIR += igraph SUBDIR += intervaltree SUBDIR += ipopt SUBDIR += ised SUBDIR += jacal SUBDIR += jags SUBDIR += jama SUBDIR += jeuclid SUBDIR += jlatexmath SUBDIR += jsmath-fonts SUBDIR += jtransforms SUBDIR += jts SUBDIR += kalgebra SUBDIR += kbruch SUBDIR += kcalc SUBDIR += kig SUBDIR += kktdirect SUBDIR += kmplot SUBDIR += labplot SUBDIR += lambda SUBDIR += lapack SUBDIR += lapack++ SUBDIR += lapack95 SUBDIR += lapacke SUBDIR += laspack SUBDIR += latte-integrale SUBDIR += ldouble SUBDIR += lean SUBDIR += lemon SUBDIR += levmar SUBDIR += libRmath SUBDIR += libccd SUBDIR += libflame SUBDIR += liblbfgs SUBDIR += libmesh SUBDIR += libmissing SUBDIR += libnormaliz SUBDIR += libocas SUBDIR += liborigin SUBDIR += libpgmath SUBDIR += libpoly SUBDIR += libqalculate SUBDIR += libranlip SUBDIR += librdata SUBDIR += librsb SUBDIR += libtommath SUBDIR += libtsnnls SUBDIR += libxls SUBDIR += libxlsxwriter SUBDIR += libxsmm SUBDIR += lidia SUBDIR += linpack SUBDIR += lis SUBDIR += lll_spect SUBDIR += lp_solve SUBDIR += lrng SUBDIR += lrslib SUBDIR += ltl SUBDIR += ltl2ba SUBDIR += mate-calc SUBDIR += math77 SUBDIR += mathgl SUBDIR += mathmod SUBDIR += mathomatic SUBDIR += matio SUBDIR += matlab-installer SUBDIR += maxima SUBDIR += mbasecalc SUBDIR += mcsim SUBDIR += metis SUBDIR += mfem SUBDIR += mingw32-libgmp SUBDIR += minisat SUBDIR += miracl SUBDIR += mkl-dnn SUBDIR += mlpack SUBDIR += moab SUBDIR += moo SUBDIR += mpc SUBDIR += mpexpr SUBDIR += mpfr SUBDIR += mpfrc++ SUBDIR += mpir SUBDIR += mppp SUBDIR += mprime SUBDIR += mtrxmath SUBDIR += multichoose SUBDIR += mumps SUBDIR += mumps4 SUBDIR += muparser SUBDIR += nanoflann SUBDIR += naturalmath SUBDIR += nauty SUBDIR += ndiff SUBDIR += newmat SUBDIR += nfft SUBDIR += ngraph SUBDIR += nlopt SUBDIR += ntl SUBDIR += numdiff SUBDIR += ocaml-ocamlgraph SUBDIR += ocaml-zarith SUBDIR += ocamlgsl SUBDIR += octave SUBDIR += octave-forge SUBDIR += octave-forge-actuarial SUBDIR += octave-forge-audio SUBDIR += octave-forge-base SUBDIR += octave-forge-bim SUBDIR += octave-forge-bioinfo SUBDIR += octave-forge-bsltl SUBDIR += octave-forge-cgi SUBDIR += octave-forge-civil-engineering SUBDIR += octave-forge-communications SUBDIR += octave-forge-control SUBDIR += octave-forge-data-smoothing SUBDIR += octave-forge-database SUBDIR += octave-forge-dataframe SUBDIR += octave-forge-dicom SUBDIR += octave-forge-divand SUBDIR += octave-forge-doctest SUBDIR += octave-forge-econometrics SUBDIR += octave-forge-fenv SUBDIR += octave-forge-financial SUBDIR += octave-forge-fits SUBDIR += octave-forge-fpl SUBDIR += octave-forge-fuzzy-logic-toolkit SUBDIR += octave-forge-ga SUBDIR += octave-forge-general SUBDIR += octave-forge-generate_html SUBDIR += octave-forge-geometry SUBDIR += octave-forge-gnuplot SUBDIR += octave-forge-gsl SUBDIR += octave-forge-ident SUBDIR += octave-forge-image SUBDIR += octave-forge-informationtheory SUBDIR += octave-forge-integration SUBDIR += octave-forge-interval SUBDIR += octave-forge-io SUBDIR += octave-forge-irsa SUBDIR += octave-forge-level-set SUBDIR += octave-forge-linear-algebra SUBDIR += octave-forge-lssa SUBDIR += octave-forge-ltfat SUBDIR += octave-forge-mapping SUBDIR += octave-forge-matgeom SUBDIR += octave-forge-mechanics SUBDIR += octave-forge-miscellaneous SUBDIR += octave-forge-missing-functions SUBDIR += octave-forge-msh SUBDIR += octave-forge-multicore SUBDIR += octave-forge-mvn SUBDIR += octave-forge-nan SUBDIR += octave-forge-ncarray SUBDIR += octave-forge-netcdf SUBDIR += octave-forge-nlwing2 SUBDIR += octave-forge-nnet SUBDIR += octave-forge-nurbs SUBDIR += octave-forge-oct2mat SUBDIR += octave-forge-octclip SUBDIR += octave-forge-octproj SUBDIR += octave-forge-odebvp SUBDIR += octave-forge-optics SUBDIR += octave-forge-optim SUBDIR += octave-forge-optiminterp SUBDIR += octave-forge-outliers SUBDIR += octave-forge-plot SUBDIR += octave-forge-quaternion SUBDIR += octave-forge-queueing SUBDIR += octave-forge-secs1d SUBDIR += octave-forge-secs2d SUBDIR += octave-forge-secs3d SUBDIR += octave-forge-signal SUBDIR += octave-forge-simp SUBDIR += octave-forge-sockets SUBDIR += octave-forge-sparsersb SUBDIR += octave-forge-specfun SUBDIR += octave-forge-special-matrix SUBDIR += octave-forge-splines SUBDIR += octave-forge-statistics SUBDIR += octave-forge-stk SUBDIR += octave-forge-struct SUBDIR += octave-forge-symband SUBDIR += octave-forge-symbolic SUBDIR += octave-forge-tcl-octave SUBDIR += octave-forge-tsa SUBDIR += octave-forge-zenity SUBDIR += octave-forge-zeromq SUBDIR += octomap SUBDIR += oleo SUBDIR += openblas SUBDIR += openfst SUBDIR += openlibm SUBDIR += openmesh SUBDIR += opensolaris-libm SUBDIR += openturns SUBDIR += optpp SUBDIR += orpie SUBDIR += osi SUBDIR += osqp SUBDIR += p5-AI-DecisionTree SUBDIR += p5-AI-Genetic SUBDIR += p5-AI-NeuralNet-BackProp SUBDIR += p5-AI-Perceptron SUBDIR += p5-Algorithm-Combinatorics SUBDIR += p5-Algorithm-CurveFit SUBDIR += p5-Algorithm-KMeans SUBDIR += p5-Algorithm-Munkres SUBDIR += p5-Bit-ShiftReg SUBDIR += p5-Bit-Vector SUBDIR += p5-Bit-Vector-Minimal SUBDIR += p5-CAD-Calc SUBDIR += p5-Chart-Math-Axis SUBDIR += p5-Data-Float SUBDIR += p5-Date-Handler SUBDIR += p5-GIS-Distance SUBDIR += p5-GIS-Distance-Fast SUBDIR += p5-GIS-Distance-Lite SUBDIR += p5-Geo-Coordinates-UTM SUBDIR += p5-Geo-Distance SUBDIR += p5-Geo-Distance-XS SUBDIR += p5-Graph SUBDIR += p5-Math-Algebra-Symbols SUBDIR += p5-Math-Base36 SUBDIR += p5-Math-Base85 SUBDIR += p5-Math-BaseCalc SUBDIR += p5-Math-BaseCnv SUBDIR += p5-Math-Bezier SUBDIR += p5-Math-Bezier-Convert SUBDIR += p5-Math-BigInt SUBDIR += p5-Math-BigInt-FastCalc SUBDIR += p5-Math-BigInt-GMP SUBDIR += p5-Math-BigInt-Lite SUBDIR += p5-Math-BigInt-Pari SUBDIR += p5-Math-BigRat SUBDIR += p5-Math-CDF SUBDIR += p5-Math-Calc-Units SUBDIR += p5-Math-Cephes SUBDIR += p5-Math-Combinatorics SUBDIR += p5-Math-Complex SUBDIR += p5-Math-ConvexHull SUBDIR += p5-Math-Currency SUBDIR += p5-Math-Derivative SUBDIR += p5-Math-Evol SUBDIR += p5-Math-Expr SUBDIR += p5-Math-FFT SUBDIR += p5-Math-FixedPrecision SUBDIR += p5-Math-Fleximal SUBDIR += p5-Math-GMP SUBDIR += p5-Math-GMPf SUBDIR += p5-Math-GMPq SUBDIR += p5-Math-GMPz SUBDIR += p5-Math-GSL SUBDIR += p5-Math-Geometry SUBDIR += p5-Math-Geometry-Planar SUBDIR += p5-Math-Geometry-Planar-GPC SUBDIR += p5-Math-Geometry-Planar-GPC-PolygonXS SUBDIR += p5-Math-Geometry-Planar-Offset SUBDIR += p5-Math-Geometry-Voronoi SUBDIR += p5-Math-Gradient SUBDIR += p5-Math-Int128 SUBDIR += p5-Math-Int64 SUBDIR += p5-Math-Interpolate SUBDIR += p5-Math-Intersection-StraightLine SUBDIR += p5-Math-Logic SUBDIR += p5-Math-MPC SUBDIR += p5-Math-MPFR SUBDIR += p5-Math-Matrix SUBDIR += p5-Math-MatrixReal SUBDIR += p5-Math-NumberCruncher SUBDIR += p5-Math-Pari SUBDIR += p5-Math-Polygon SUBDIR += p5-Math-Polygon-Tree SUBDIR += p5-Math-Polynomial-Solve SUBDIR += p5-Math-Prime-Util SUBDIR += p5-Math-Prime-Util-GMP SUBDIR += p5-Math-Prime-XS SUBDIR += p5-Math-ProvablePrime SUBDIR += p5-Math-RPN SUBDIR += p5-Math-Random SUBDIR += p5-Math-Random-ISAAC SUBDIR += p5-Math-Random-ISAAC-XS SUBDIR += p5-Math-Random-MT SUBDIR += p5-Math-Random-MT-Auto SUBDIR += p5-Math-Random-OO SUBDIR += p5-Math-Random-Secure SUBDIR += p5-Math-RandomOrg SUBDIR += p5-Math-Round SUBDIR += p5-Math-Round-Var SUBDIR += p5-Math-Sequence SUBDIR += p5-Math-Series SUBDIR += p5-Math-SigFigs SUBDIR += p5-Math-SimpleVariable SUBDIR += p5-Math-Spline SUBDIR += p5-Math-String SUBDIR += p5-Math-Symbolic SUBDIR += p5-Math-Symbolic-Custom-CCompiler SUBDIR += p5-Math-Symbolic-Custom-Contains SUBDIR += p5-Math-Symbolic-Custom-ErrorPropagation SUBDIR += p5-Math-Symbolic-Custom-LaTeXDumper SUBDIR += p5-Math-Symbolic-Custom-Pattern SUBDIR += p5-Math-Symbolic-Custom-Simplification SUBDIR += p5-Math-Symbolic-Custom-Transformation SUBDIR += p5-Math-SymbolicX-BigNum SUBDIR += p5-Math-SymbolicX-Complex SUBDIR += p5-Math-SymbolicX-Error SUBDIR += p5-Math-SymbolicX-Inline SUBDIR += p5-Math-SymbolicX-NoSimplification SUBDIR += p5-Math-SymbolicX-ParserExtensionFactory SUBDIR += p5-Math-SymbolicX-Statistics-Distributions SUBDIR += p5-Math-TrulyRandom SUBDIR += p5-Math-Units SUBDIR += p5-Math-Utils SUBDIR += p5-Math-Vec SUBDIR += p5-Math-VecStat SUBDIR += p5-Math-VectorReal SUBDIR += p5-NetCDF SUBDIR += p5-Number-Compare SUBDIR += p5-Number-Fraction SUBDIR += p5-Number-Misc SUBDIR += p5-Number-Uncertainty SUBDIR += p5-Number-WithError SUBDIR += p5-Number-WithError-LaTeX SUBDIR += p5-Parse-Range SUBDIR += p5-Roman SUBDIR += p5-Set-IntSpan SUBDIR += p5-Set-IntSpan-Fast SUBDIR += p5-Set-IntSpan-Fast-XS SUBDIR += p5-Set-Partition SUBDIR += p5-Set-Window SUBDIR += p5-Statistics-Basic SUBDIR += p5-Statistics-Benford SUBDIR += p5-Statistics-CaseResampling SUBDIR += p5-Statistics-ChiSquare SUBDIR += p5-Statistics-Contingency SUBDIR += p5-Statistics-Descriptive SUBDIR += p5-Statistics-Descriptive-Discrete SUBDIR += p5-Statistics-Distributions SUBDIR += p5-Statistics-Forecast SUBDIR += p5-Statistics-Frequency SUBDIR += p5-Statistics-LTU SUBDIR += p5-Statistics-LineFit SUBDIR += p5-Statistics-Lite SUBDIR += p5-Statistics-OLS SUBDIR += p5-Statistics-R SUBDIR += p5-Statistics-Regression SUBDIR += p5-Statistics-TTest SUBDIR += p5-Task-Math-Symbolic SUBDIR += p5-Text-AsciiTeX SUBDIR += p5-bignum SUBDIR += pantheon-calculator SUBDIR += pari SUBDIR += parmetis SUBDIR += parmgridgen SUBDIR += pdal SUBDIR += pear-Math_BigInteger SUBDIR += pear-Math_Combinatorics SUBDIR += pecl-bitset SUBDIR += pecl-stats2 SUBDIR += petiga SUBDIR += php72-bcmath SUBDIR += php72-gmp SUBDIR += php73-bcmath SUBDIR += php73-gmp SUBDIR += php74-bcmath SUBDIR += php74-gmp SUBDIR += physcalc SUBDIR += picosat SUBDIR += piranha SUBDIR += plman SUBDIR += ploticus SUBDIR += ploticus-nox11 SUBDIR += plplot SUBDIR += plplot-ada SUBDIR += poly2tri SUBDIR += polylib SUBDIR += primegen SUBDIR += primesieve SUBDIR += primme SUBDIR += prng SUBDIR += proofgeneral SUBDIR += pspp SUBDIR += py-CyLP SUBDIR += py-Diofant SUBDIR += py-GridDataFormats SUBDIR += py-MutatorMath SUBDIR += py-PuLP SUBDIR += py-PyMetis SUBDIR += py-PySCIPOpt SUBDIR += py-PyWavelets SUBDIR += py-Pyomo SUBDIR += py-algopy SUBDIR += py-altgraph SUBDIR += py-apgl SUBDIR += py-arviz SUBDIR += py-autograd SUBDIR += py-basemap-data SUBDIR += py-bayesian-optimization SUBDIR += py-bitmath SUBDIR += py-bitvector SUBDIR += py-bottleneck SUBDIR += py-cdecimal SUBDIR += py-chaospy SUBDIR += py-claripy SUBDIR += py-cma SUBDIR += py-colormath SUBDIR += py-cryptominisat SUBDIR += py-cvxopt SUBDIR += py-cvxpy SUBDIR += py-cyipopt SUBDIR += py-deap SUBDIR += py-ecos SUBDIR += py-fastcluster SUBDIR += py-fastdtw SUBDIR += py-ffc SUBDIR += py-fiat SUBDIR += py-fpconst SUBDIR += py-gau2grid SUBDIR += py-gimmik SUBDIR += py-gmpy SUBDIR += py-gmpy2 SUBDIR += py-grandalf SUBDIR += py-graphillion SUBDIR += py-gym SUBDIR += py-hdbscan SUBDIR += py-igakit SUBDIR += py-igraph SUBDIR += py-intspan SUBDIR += py-keras SUBDIR += py-keras-applications SUBDIR += py-keras-preprocessing SUBDIR += py-kiwisolver SUBDIR += py-levmar SUBDIR += py-libpoly SUBDIR += py-luminol SUBDIR += py-matplotlib SUBDIR += py-matplotlib-scalebar SUBDIR += py-mpmath SUBDIR += py-munkres SUBDIR += py-munkres10 SUBDIR += py-networkx SUBDIR += py-networkx1 SUBDIR += py-nevergrad SUBDIR += py-numeric SUBDIR += py-numexpr SUBDIR += py-numpy SUBDIR += py-nzmath SUBDIR += py-onnx SUBDIR += py-osqp SUBDIR += py-pandas SUBDIR += py-pandas-datareader SUBDIR += py-patsy SUBDIR += py-permutation SUBDIR += py-petsc4py SUBDIR += py-piranha SUBDIR += py-plastex SUBDIR += py-primme SUBDIR += py-pyFFTW SUBDIR += py-pyasp SUBDIR += py-pybloom SUBDIR += py-pyclipper SUBDIR += py-pycosat SUBDIR += py-pygsl SUBDIR += py-pygslodeiv2 SUBDIR += py-pyhull SUBDIR += py-pyipopt SUBDIR += py-pymc SUBDIR += py-pymc3 SUBDIR += py-pyneqsys SUBDIR += py-pynleq2 SUBDIR += py-pynndescent SUBDIR += py-pyodeint SUBDIR += py-pyodesys SUBDIR += py-pysmt SUBDIR += py-pysparse SUBDIR += py-pystan SUBDIR += py-pysym SUBDIR += py-python-louvain SUBDIR += py-pyvtk SUBDIR += py-quadprog SUBDIR += py-random2 SUBDIR += py-rapi SUBDIR += py-roman SUBDIR += py-rpy2 SUBDIR += py-scientific SUBDIR += py-scikit-umfpack SUBDIR += py-scs SUBDIR += py-seaborn SUBDIR += py-secp256k1 SUBDIR += py-simhash SUBDIR += py-slepc4py SUBDIR += py-spectral SUBDIR += py-spot SUBDIR += py-statsmodels SUBDIR += py-statsmodels010 SUBDIR += py-svgmath SUBDIR += py-sym SUBDIR += py-symcxx SUBDIR += py-sympy SUBDIR += py-theano SUBDIR += py-ufl SUBDIR += py-uncertainties SUBDIR += py-vincenty SUBDIR += py-yt SUBDIR += py-z3-solver SUBDIR += qalculate SUBDIR += qd SUBDIR += qhull SUBDIR += qhull5 SUBDIR += qposases SUBDIR += qrupdate SUBDIR += qtiplot-doc SUBDIR += qwtplot3d SUBDIR += randlib SUBDIR += rapid SUBDIR += reduce SUBDIR += reduce-psl SUBDIR += reed-solomon SUBDIR += rehearse SUBDIR += rexx-regmath SUBDIR += rkward-kde SUBDIR += rngstreams SUBDIR += rocs SUBDIR += rpcalc SUBDIR += rubygem-algebra SUBDIR += rubygem-expression_parser SUBDIR += rubygem-fftw3 SUBDIR += rubygem-mathn SUBDIR += rubygem-mtrc SUBDIR += rubygem-narray SUBDIR += rubygem-narray_miss SUBDIR += rubygem-numru-misc SUBDIR += rubygem-numru-units SUBDIR += rubygem-rb-gsl SUBDIR += rumur SUBDIR += saga SUBDIR += sage SUBDIR += sc SUBDIR += sc-im SUBDIR += scalapack SUBDIR += scilab SUBDIR += scilab-toolbox-swt SUBDIR += scs SUBDIR += sdpa SUBDIR += secp256k1 SUBDIR += sfft SUBDIR += sfst SUBDIR += simd-viterbi SUBDIR += singular SUBDIR += sisl SUBDIR += slatec SUBDIR += sleef SUBDIR += slepc SUBDIR += slgrace SUBDIR += snns SUBDIR += solitaire SUBDIR += sound-of-sorting SUBDIR += spar SUBDIR += spblas SUBDIR += spectra SUBDIR += speedcrunch SUBDIR += spooles SUBDIR += spooles-mpich SUBDIR += spot SUBDIR += stp SUBDIR += suitesparse SUBDIR += sundials SUBDIR += superlu SUBDIR += symmetrica SUBDIR += symphony SUBDIR += tablix SUBDIR += taucs SUBDIR += tblis SUBDIR += tetgen SUBDIR += teyjus SUBDIR += timbl SUBDIR += tmv SUBDIR += tomsfastmath SUBDIR += topaz SUBDIR += topcom SUBDIR += triangle SUBDIR += trlan SUBDIR += truthtable SUBDIR += tvmet SUBDIR += ump SUBDIR += units SUBDIR += unuran SUBDIR += vampire SUBDIR += viennacl SUBDIR += visualpolylib SUBDIR += vowpal_wabbit SUBDIR += vtk6 SUBDIR += vtk8 SUBDIR += wavelib SUBDIR += wcalc SUBDIR += wfmath SUBDIR += why3 SUBDIR += wingz3 SUBDIR += wxmaxima SUBDIR += x12arima SUBDIR += xblas SUBDIR += xfce4-calculator-plugin SUBDIR += xgraph SUBDIR += xlapack SUBDIR += xldlas SUBDIR += xlife++ SUBDIR += xplot SUBDIR += xppaut SUBDIR += xspread SUBDIR += xtensor SUBDIR += yacas SUBDIR += yices SUBDIR += z3 SUBDIR += zegrapher SUBDIR += zimpl .include diff --git a/math/dune-common/Makefile b/math/dune-common/Makefile new file mode 100644 index 000000000000..fde69e524d02 --- /dev/null +++ b/math/dune-common/Makefile @@ -0,0 +1,44 @@ +# $FreeBSD$ + +PORTNAME= dune-common +DISTVERSIONPREFIX= v +DISTVERSION= 2.7.0 +CATEGORIES= math + +MAINTAINER= yuri@FreeBSD.org +COMMENT= DUNE framework: Build system, infrastructure and foundation classes + +LICENSE= GPLv2 +LICENSE_FILE= ${WRKSRC}/LICENSE.md + +BUILD_DEPENDS= openmpi>0:net/openmpi \ + vc>0:devel/vc +LIB_DEPENDS= libopenblas.so:math/openblas \ + libtbb.so:devel/tbb + +USES= cmake compiler:c++17-lang fortran pkgconfig python shebangfix +SHEBANG_FILES= bin/dune-ctest +USE_GITLAB= yes +USE_LDCONFIG= yes + +GL_ACCOUNT= core +GL_SITE= https://gitlab.dune-project.org +GL_ACCOUNT= core +GL_COMMIT= c5321673af09725a411bdd81aa2be5cfaf8bf9a6 + +CMAKE_ON= BUILD_SHARED_LIBS + +OPTIONS_DEFINE= DOCS +OPTIONS_SUB= yes + +DOCS_BUILD_DEPENDS= latex:print/tex-formats +DOCS_CMAKE_BOOL= FREEBSD_INSTALL_DOCS +DOCS_BUILD_DEPENDS= doxygen:devel/doxygen \ + sphinx-build:textproc/py-sphinx + +PORTDOCS= * + +post-stage-DOCS-on: # https://gitlab.dune-project.org/core/dune-common/issues/191 + @${RMDIR} ${STAGEDIR}${DOCSDIR}/comm + +.include diff --git a/math/dune-common/distinfo b/math/dune-common/distinfo new file mode 100644 index 000000000000..fae8a3469a7e --- /dev/null +++ b/math/dune-common/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1584201333 +SHA256 (core-dune-common-c5321673af09725a411bdd81aa2be5cfaf8bf9a6_GL0.tar.gz) = 1154fc0054c0a214fbfff776f10588fe5f4c23efa8c6333574ee0758085990fb +SIZE (core-dune-common-c5321673af09725a411bdd81aa2be5cfaf8bf9a6_GL0.tar.gz) = 573359 diff --git a/math/dune-common/files/patch-CMakeLists.txt b/math/dune-common/files/patch-CMakeLists.txt new file mode 100644 index 000000000000..29b64ae6dd74 --- /dev/null +++ b/math/dune-common/files/patch-CMakeLists.txt @@ -0,0 +1,12 @@ +--- CMakeLists.txt.orig 2020-03-14 17:13:03 UTC ++++ CMakeLists.txt +@@ -21,7 +21,9 @@ add_subdirectory("lib") + add_subdirectory("share") + add_subdirectory("dune") + add_subdirectory("bin") ++if (FREEBSD_INSTALL_DOCS) + add_subdirectory("doc") ++endif() + add_subdirectory("cmake/modules") + add_subdirectory("cmake/scripts") + diff --git a/math/dune-common/pkg-descr b/math/dune-common/pkg-descr new file mode 100644 index 000000000000..af82bea15b05 --- /dev/null +++ b/math/dune-common/pkg-descr @@ -0,0 +1,6 @@ +DUNE, the Distributed and Unified Numerics Environment is a modular toolbox for +solving partial differential equations (PDEs) with grid-based methods. It +supports the easy implementation of methods like Finite Elements (FE), Finite +Volumes (FV), and also Finite Differences (FD). + +WWW: https://www.dune-project.org/ diff --git a/math/dune-common/pkg-plist b/math/dune-common/pkg-plist new file mode 100644 index 000000000000..2cad8a63217c --- /dev/null +++ b/math/dune-common/pkg-plist @@ -0,0 +1,206 @@ +bin/dune-ctest +bin/dune-git-whitespace-hook +bin/dunecontrol +bin/duneproject +include/dune/common/alignedallocator.hh +include/dune/common/arraylist.hh +include/dune/common/assertandreturn.hh +include/dune/common/bartonnackmanifcheck.hh +include/dune/common/bigunsignedint.hh +include/dune/common/binaryfunctions.hh +include/dune/common/bitsetvector.hh +include/dune/common/boundschecking.hh +include/dune/common/classname.hh +include/dune/common/concept.hh +include/dune/common/conditional.hh +include/dune/common/debugalign.hh +include/dune/common/debugallocator.hh +include/dune/common/debugstream.hh +include/dune/common/densematrix.hh +include/dune/common/densevector.hh +include/dune/common/deprecated.hh +include/dune/common/diagonalmatrix.hh +include/dune/common/documentation.hh +include/dune/common/dotproduct.hh +include/dune/common/dynmatrix.hh +include/dune/common/dynmatrixev.hh +include/dune/common/dynvector.hh +include/dune/common/enumset.hh +include/dune/common/exceptions.hh +include/dune/common/filledarray.hh +include/dune/common/float_cmp.cc +include/dune/common/float_cmp.hh +include/dune/common/fmatrix.hh +include/dune/common/fmatrixev.hh +include/dune/common/ftraits.hh +include/dune/common/function.hh +include/dune/common/fvector.hh +include/dune/common/gcd.hh +include/dune/common/genericiterator.hh +include/dune/common/gmpfield.hh +include/dune/common/hash.hh +include/dune/common/hybridutilities.hh +include/dune/common/indent.hh +include/dune/common/indices.hh +include/dune/common/interfaces.hh +include/dune/common/ios_state.hh +include/dune/common/iteratorfacades.hh +include/dune/common/iteratorrange.hh +include/dune/common/keywords.hh +include/dune/common/lcm.hh +include/dune/common/lru.hh +include/dune/common/mallocallocator.hh +include/dune/common/math.hh +include/dune/common/matvectraits.hh +include/dune/common/overloadset.hh +include/dune/common/parallel/collectivecommunication.hh +include/dune/common/parallel/communication.hh +include/dune/common/parallel/communicator.hh +include/dune/common/parallel/future.hh +include/dune/common/parallel/indexset.hh +include/dune/common/parallel/indicessyncer.hh +include/dune/common/parallel/interface.hh +include/dune/common/parallel/localindex.hh +include/dune/common/parallel/mpicollectivecommunication.hh +include/dune/common/parallel/mpicommunication.hh +include/dune/common/parallel/mpidata.hh +include/dune/common/parallel/mpifuture.hh +include/dune/common/parallel/mpiguard.hh +include/dune/common/parallel/mpihelper.hh +include/dune/common/parallel/mpipack.hh +include/dune/common/parallel/mpitraits.hh +include/dune/common/parallel/plocalindex.hh +include/dune/common/parallel/remoteindices.hh +include/dune/common/parallel/selection.hh +include/dune/common/parallel/variablesizecommunicator.hh +include/dune/common/parameterizedobject.hh +include/dune/common/parametertree.hh +include/dune/common/parametertreeparser.hh +include/dune/common/path.hh +include/dune/common/poolallocator.hh +include/dune/common/power.hh +include/dune/common/precision.hh +include/dune/common/promotiontraits.hh +include/dune/common/propertymap.hh +include/dune/common/proxymemberaccess.hh +include/dune/common/quadmath.hh +include/dune/common/rangeutilities.hh +include/dune/common/reservedvector.hh +include/dune/common/scalarmatrixview.hh +include/dune/common/scalarvectorview.hh +include/dune/common/shared_ptr.hh +include/dune/common/simd.hh +include/dune/common/simd/base.hh +include/dune/common/simd/defaults.hh +include/dune/common/simd/interface.hh +include/dune/common/simd/io.hh +include/dune/common/simd/loop.hh +include/dune/common/simd/simd.hh +include/dune/common/simd/standard.hh +include/dune/common/simd/test.hh +include/dune/common/simd/vc.hh +include/dune/common/singleton.hh +include/dune/common/sllist.hh +include/dune/common/std/apply.hh +include/dune/common/std/make_array.hh +include/dune/common/std/memory.hh +include/dune/common/std/optional.hh +include/dune/common/std/type_traits.hh +include/dune/common/std/utility.hh +include/dune/common/std/variant.hh +include/dune/common/stdstreams.hh +include/dune/common/stdthread.hh +include/dune/common/streamoperators.hh +include/dune/common/stringutility.hh +include/dune/common/test/arithmetictestsuite.hh +include/dune/common/test/checkmatrixinterface.hh +include/dune/common/test/collectorstream.hh +include/dune/common/test/iteratortest.hh +include/dune/common/test/testsuite.hh +include/dune/common/timer.hh +include/dune/common/to_unique_ptr.hh +include/dune/common/tupleutility.hh +include/dune/common/tuplevector.hh +include/dune/common/typelist.hh +include/dune/common/typetraits.hh +include/dune/common/typeutilities.hh +include/dune/common/unused.hh +include/dune/common/vc.hh +include/dune/common/version.hh +include/dune/common/visibility.hh +lib/cmake/dune-common/dune-common-config-version.cmake +lib/cmake/dune-common/dune-common-config.cmake +lib/cmake/dune-common/dune-common-targets-%%CMAKE_BUILD_TYPE%%.cmake +lib/cmake/dune-common/dune-common-targets.cmake +lib/dunecontrol/dune-common/dune.module +lib/dunemodules.lib +lib/libdunecommon.so +libdata/pkgconfig/dune-common.pc +%%DOCS%%man/man1/dunecontrol.1.gz +share/bash-completion/completions/dunecontrol +%%DATADIR%%/config.h.cmake +%%DOCS%%%%DATADIR%%/doc/doxygen/Doxystyle +%%DOCS%%%%DATADIR%%/doc/doxygen/doxygen-macros +share/dune/cmake/modules/AddGMPFlags.cmake +share/dune/cmake/modules/AddMETISFlags.cmake +share/dune/cmake/modules/AddPTScotchFlags.cmake +share/dune/cmake/modules/AddParMETISFlags.cmake 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