diff --git a/biology/viennarna/Makefile b/biology/viennarna/Makefile index 2f63809d8c61..9b9d0b3b4adb 100644 --- a/biology/viennarna/Makefile +++ b/biology/viennarna/Makefile @@ -1,51 +1,56 @@ PORTNAME= viennarna -DISTVERSION= 2.6.3 +DISTVERSION= 2.6.4 CATEGORIES= biology MASTER_SITES= https://www.tbi.univie.ac.at/RNA/download/sourcecode/2_6_x/ DISTNAME= ViennaRNA-${DISTVERSION} MAINTAINER= yuri@FreeBSD.org COMMENT= Alignment tools for the structural analysis of RNA WWW= https://www.tbi.univie.ac.at/RNA/ LICENSE= ViennaRNALicense LICENSE_NAME= Vienna RNA License LICENSE_FILE= ${WRKSRC}/COPYING LICENSE_PERMS= auto-accept dist-mirror pkg-mirror -BROKEN_FreeBSD_14= fails to compile: no member named 'bind2nd' in namespace 'std' +#BROKEN_FreeBSD_14= fails to compile: no member named 'bind2nd' in namespace 'std' BUILD_DEPENDS= bash:shells/bash \ + lapacke>0:math/lapacke \ libgd>0:graphics/gd # for the static lib +BUILD_DEPENDS+= swig:devel/swig \ + xxd:sysutils/xxd LIB_DEPENDS= libgmp.so:math/gmp \ libgsl.so:math/gsl \ liblapack.so:math/lapack \ - libmpfr.so:math/mpfr \ - libopenblas.so:math/openblas + libmpfr.so:math/mpfr -USES= autoreconf compiler:c++11-lang fortran gmake libtool localbase perl5 pkgconfig xorg # w/out autoreconf -lstdc++ is present in configure and Makefiles and this causes link failure -USE_XORG= x11 xext # only for build +USES= autoreconf bison compiler:c++17-lang fortran gmake \ + libtool localbase perl5 pkgconfig xorg # w/out autoreconf -lstdc++ is present in configure and Makefiles and this causes link failure +USE_XORG= ice x11 xext # only for build GNU_CONFIGURE= yes CONFIGURE_SHELL= ${PREFIX}/bin/bash CONFIGURE_ARGS= --enable-shared --disable-static --with-gsl --with-cluster --with-kinwalker --enable-mpfr --without-python --without-python3 --without-perl +CXXFLAGS+= -Dregister= # workaround for https://github.com/ViennaRNA/ViennaRNA/issues/214 + TEST_TARGET= check CONFLICTS_INSTALL= g2 # include/g2.h INFO= RNAlib DATASDIR= ${PREFIX}/share/ViennaRNA DOCSDIR= ${PREFIX}/share/doc/ViennaRNA EXAMPLESDIR= ${PREFIX}/share/examples/ViennaRNA OPTIONS_DEFINE= DOCS EXAMPLES PORTDOCS= * PORTEXAMPLES= * post-configure: # remove -lstdc++ from .pc file @${REINPLACE_CMD} -e 's| -lstdc++||' ${WRKSRC}/RNAlib2.pc .include diff --git a/biology/viennarna/distinfo b/biology/viennarna/distinfo index 25276d5df560..75d1552bb0c9 100644 --- a/biology/viennarna/distinfo +++ b/biology/viennarna/distinfo @@ -1,3 +1,3 @@ -TIMESTAMP = 1690013390 -SHA256 (ViennaRNA-2.6.3.tar.gz) = 07b5c3abcda3076f3dd2041a67df5aa25d21468ae41f18eaecf3aaa7751ab495 -SIZE (ViennaRNA-2.6.3.tar.gz) = 66320039 +TIMESTAMP = 1699041043 +SHA256 (ViennaRNA-2.6.4.tar.gz) = d1259ce5809601a12b0dc9b724ea2c55806fece80d8d83ad417ea8a2dd574982 +SIZE (ViennaRNA-2.6.4.tar.gz) = 69749819