diff --git a/biology/py-scikit-bio/Makefile b/biology/py-scikit-bio/Makefile
index 2d1d90692cca..7baf8e6e4eda 100644
--- a/biology/py-scikit-bio/Makefile
+++ b/biology/py-scikit-bio/Makefile
@@ -1,49 +1,49 @@
 PORTNAME=	scikit-bio
-DISTVERSION=	0.5.7
+DISTVERSION=	0.5.8
 CATEGORIES=	biology education python
 MASTER_SITES=	PYPI
 PKGNAMEPREFIX=	${PYTHON_PKGNAMEPREFIX}
 
 MAINTAINER=	yuri@FreeBSD.org
 COMMENT=	Data structures, algorithms, educational resources for bioinformatics
 WWW=		http://scikit-bio.org/
 
 LICENSE=	BSD3CLAUSE
-LICENSE_FILE=	${WRKSRC}/COPYING.txt
+LICENSE_FILE=	${WRKSRC}/LICENSE.txt
 
 BROKEN_aarch64=	fails to build: invalid conversion between vector type '__m64' (vector of 1 'long long' value) and integer type 'int' of different size, see https://github.com/biocore/scikit-bio/issues/1816
 
 BUILD_DEPENDS=	${PYNUMPY}
 RUN_DEPENDS=	${PYNUMPY} \
 		${PYTHON_PKGNAMEPREFIX}CacheControl>=0.11.5:www/py-cachecontrol@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}decorator>=3.4.2:devel/py-decorator@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}h5py>=2.9.0:science/py-h5py@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}hdmedians>=0.14.1:math/py-hdmedians@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}ipython>=3.2.0:devel/ipython@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}lockfile>=0.10.2:devel/py-lockfile@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}matplotlib>=1.4.3:math/py-matplotlib@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}natsort>=4.0.3:devel/py-natsort@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}pandas>=1.0.0:math/py-pandas@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scikit-learn>=0.19.1:science/py-scikit-learn@${PY_FLAVOR} \
 		${PYTHON_PKGNAMEPREFIX}scipy>=1.3.0:science/py-scipy@${PY_FLAVOR}
 
 USES=		python:3.7+
 USE_PYTHON=	distutils cython autoplist pytest # tests fail to run, see https://github.com/biocore/scikit-bio/issues/1846
 
 TEST_ENV=	${MAKE_ENV} PYTHONPATH=${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}
 
 CONFLICTS_INSTALL=	${PYTHON_PKGNAMEPREFIX}ddtrace # lib/python3.8/site-packages/benchmarks/__init__.py
 
 .include <bsd.port.options.mk>
 
 .if ${ARCH} == i386
 CFLAGS+=	-msse2 # workaround for https://github.com/biocore/scikit-bio/issues/1727
 CXXFLAGS+=	-msse2
 .endif
 
 post-install:
 	@${STRIP_CMD} \
 		${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*${PYTHON_EXT_SUFFIX}.so \
 		${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/skbio/*/*/*${PYTHON_EXT_SUFFIX}.so
 
 .include <bsd.port.mk>
diff --git a/biology/py-scikit-bio/distinfo b/biology/py-scikit-bio/distinfo
index 9c48346f4bed..2f69722f7ffc 100644
--- a/biology/py-scikit-bio/distinfo
+++ b/biology/py-scikit-bio/distinfo
@@ -1,3 +1,3 @@
-TIMESTAMP = 1649956313
-SHA256 (scikit-bio-0.5.7.tar.gz) = 6343ca0c621e2fcc5d1c042c8be3200664c5325956a83bea751cf1bcc75d1da9
-SIZE (scikit-bio-0.5.7.tar.gz) = 8731049
+TIMESTAMP = 1679325956
+SHA256 (scikit-bio-0.5.8.tar.gz) = d55a83c3e5f2ca1132744e1409233fb61d9af0c5a95deb7b291e6e340712b86b
+SIZE (scikit-bio-0.5.8.tar.gz) = 3534584