diff --git a/biology/ncbi-blast+/Makefile b/biology/ncbi-blast+/Makefile index 61a432961bbd..078972a6f207 100644 --- a/biology/ncbi-blast+/Makefile +++ b/biology/ncbi-blast+/Makefile @@ -1,75 +1,75 @@ PORTNAME= ncbi-blast+ DISTVERSION= 2.12.0 PORTREVISION= 4 CATEGORIES= biology perl5 python MASTER_SITES= https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ \ https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${PORTVERSION}/ DISTNAME= ncbi-blast-${PORTVERSION}+-src MAINTAINER= jwb@FreeBSD.org COMMENT= NCBI implementation of Basic Local Alignment Search Tool LICENSE= PD LICENSE_FILE= ${WRKSRC}/scripts/projects/blast/LICENSE LIB_DEPENDS= libpcre.so:devel/pcre \ liblmdb.so:databases/lmdb \ liblzo2.so:archivers/lzo2 \ libgnutls.so:security/gnutls \ libtspi.so:security/trousers \ libgmp.so:math/gmp \ libidn2.so:dns/libidn2 \ libnettle.so:security/nettle \ libhogweed.so:security/nettle \ libtasn1.so:security/libtasn1 \ libp11-kit.so:security/p11-kit \ libgcrypt.so:security/libgcrypt \ libgpg-error.so:security/libgpg-error \ libsqlite3.so:databases/sqlite3 \ libuv.so:devel/libuv \ libnghttp2.so:www/libnghttp2 \ libgrpc.so:devel/grpc RUN_DEPENDS= p5-List-MoreUtils>=0:lang/p5-List-MoreUtils \ p5-JSON>=0:converters/p5-JSON USES= compiler:c++14-lang gmake localbase:ldflags shebangfix perl5 python:3.6+ USE_LDCONFIG= yes SHEBANG_FILES= src/app/blast/legacy_blast.pl \ src/app/blast/update_blastdb.pl \ src/app/blast/cleanup-blastdb-volumes.py \ src/app/blast/get_species_taxids.sh \ src/app/winmasker/windowmasker_2.2.22_adapter.py GNU_CONFIGURE= yes # configure chooses /usr/local/bin/ar with no flags # FreeBSD boost port flagged by configure as untested version # --libdir=${PREFIX}/lib/ncbi-tools++ doesn't respect DESTDIR, so do # a postinstall mv. CONFIGURE_ARGS= AR="ar cr" --without-boost --libdir=${PREFIX}/lib/ncbi-tools++ CONFLICTS_INSTALL= ncbi-cxx-toolkit WRKSRC_SUBDIR= c++ +.if !exists(/usr/include/omp.h) +CONFIGURE_ARGS+= --without-openmp +.endif + .include .if ${CHOSEN_COMPILER_TYPE} == gcc # In case of problems: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=220822 LDFLAGS+= -latomic # Only exists in gcc libs .endif -.if ${ARCH} == powerpc -CONFIGURE_ARGS+= --without-openmp -.endif - post-install: @${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/*/*/.cvsignore.extra @${RM} -rf ${STAGEDIR}${PREFIX}/lib/X11 @${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/common/config/ncbiconf_msvc_site.h.in @${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/common/ncbi_build_ver.h.in @${RM} ${STAGEDIR}${PREFIX}/include/ncbi-tools++/common/ncbi_revision.h.in @${RMDIR} ${STAGEDIR}${PREFIX}/lib/debug ${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/ncbi-tools++/*.so .include