diff --git a/biology/freebayes/Makefile b/biology/freebayes/Makefile index 9ca877a4c665..270cbce66418 100644 --- a/biology/freebayes/Makefile +++ b/biology/freebayes/Makefile @@ -1,49 +1,48 @@ PORTNAME= freebayes DISTVERSIONPREFIX= v DISTVERSION= 1.3.5 CATEGORIES= biology MAINTAINER= jwb@FreeBSD.org COMMENT= Bayesian haplotype-based polymorphism discovery and genotyping LICENSE= MIT # These should be rechecked: Same error resolved on aarch64 in 1.3.5 update. BROKEN_armv6= fails to compile: invalid conversion between vector type and integer type -BROKEN_armv7= fails to compile: invalid conversion between vector type and integer type BROKEN_riscv64= fails to compile: invalid conversion between vector type and integer type LIB_DEPENDS= libhts.so:biology/htslib \ libtabix.so:biology/tabixpp # Submodules use older versions than the ports, so we cannot safely unbundle # No shared libs are built by the submodules so there will be no conflicts USES= compiler:c++14-lang localbase meson perl5 pkgconfig USE_GITHUB= yes GH_ACCOUNT= ekg GH_TUPLE= ekg:vcflib:d4073c3:vcflib/vcflib-temp \ ekg:smithwaterman:2610e25:smithwaterman/vcflib/smithwaterman \ ekg:multichoose:68733cd:multichoose/vcflib/multichoose \ ekg:fastahack:bb33265:fastahack/vcflib/fastahack \ ekg:intervaltree:17ddd57:intervaltree/vcflib/intervaltree \ ekg:fsom:a6ef318:fsom/vcflib/fsom \ ekg:filevercmp:1a9b779:filevercmp/vcflib/filevercmp \ google:googletest:d225acc:googletest/vcflib/googletest \ edawson:libVCFH:615a06b:libVCFH/vcflib/libVCFH \ simd-everywhere:simde-no-tests:2931676:simd/vcflib/src/simde \ ekg:intervaltree:b90527f:intervaltree2/intervaltree \ ekg:tabixpp:b255df1:tabixpp/vcflib/tabixpp \ ingydotnet:test-simple-bash:124673f:testsimplebash/test/test-simple-bash \ illusori:bash-tap:c38fbfa:bashtap/test/bash-tap \ samtools:htslib:b581944:htslib/contrib/htslib USE_PERL5= build LDFLAGS+= -lexecinfo PLIST_FILES= bin/bamleftalign bin/freebayes # GH_TUPLEs cannot seem to share a top-level subdirectory, so we work around # by dumping the parent in a temp directory and then moving the contents post-extract: ${CP} -r ${WRKSRC}/vcflib-temp/* ${WRKSRC}/vcflib .include