Index: biology/jellyfish/Makefile =================================================================== --- biology/jellyfish/Makefile +++ biology/jellyfish/Makefile @@ -2,7 +2,7 @@ # $FreeBSD$ PORTNAME= jellyfish -PORTVERSION= 2.2.4 +PORTVERSION= 2.2.6 DISTVERSIONPREFIX= v CATEGORIES= biology Index: biology/jellyfish/distinfo =================================================================== --- biology/jellyfish/distinfo +++ biology/jellyfish/distinfo @@ -1,2 +1,3 @@ -SHA256 (gmarcais-Jellyfish-v2.2.4_GH0.tar.gz) = 44b6478aed63b859b8287d72b4f9bfb5d513fed334efbc8a9e5783da12ecb3ec -SIZE (gmarcais-Jellyfish-v2.2.4_GH0.tar.gz) = 658653 +TIMESTAMP = 1476027994 +SHA256 (gmarcais-Jellyfish-v2.2.6_GH0.tar.gz) = 800bc60aaec273dc04296ee7493e714457f2fe88551f76693e5d9f9a679dd35e +SIZE (gmarcais-Jellyfish-v2.2.6_GH0.tar.gz) = 660858 Index: biology/jellyfish/pkg-plist =================================================================== --- biology/jellyfish/pkg-plist +++ biology/jellyfish/pkg-plist @@ -1,52 +1,52 @@ bin/jellyfish -include/jellyfish-2.2.4/jellyfish/allocators_mmap.hpp -include/jellyfish-2.2.4/jellyfish/atomic_bits_array.hpp -include/jellyfish-2.2.4/jellyfish/atomic_field.hpp -include/jellyfish-2.2.4/jellyfish/atomic_gcc.hpp -include/jellyfish-2.2.4/jellyfish/backtrace.hpp -include/jellyfish-2.2.4/jellyfish/binary_dumper.hpp -include/jellyfish-2.2.4/jellyfish/bloom_common.hpp -include/jellyfish-2.2.4/jellyfish/bloom_counter2.hpp -include/jellyfish-2.2.4/jellyfish/bloom_filter.hpp -include/jellyfish-2.2.4/jellyfish/circular_buffer.hpp -include/jellyfish-2.2.4/jellyfish/compare_and_swap.hpp -include/jellyfish-2.2.4/jellyfish/cooperative_pool.hpp -include/jellyfish-2.2.4/jellyfish/cooperative_pool2.hpp -include/jellyfish-2.2.4/jellyfish/cpp_array.hpp -include/jellyfish-2.2.4/jellyfish/divisor.hpp -include/jellyfish-2.2.4/jellyfish/dumper.hpp -include/jellyfish-2.2.4/jellyfish/err.hpp -include/jellyfish-2.2.4/jellyfish/file_header.hpp -include/jellyfish-2.2.4/jellyfish/generator_manager.hpp -include/jellyfish-2.2.4/jellyfish/generic_file_header.hpp -include/jellyfish-2.2.4/jellyfish/hash_counter.hpp -include/jellyfish-2.2.4/jellyfish/int128.hpp -include/jellyfish-2.2.4/jellyfish/jellyfish.hpp -include/jellyfish-2.2.4/jellyfish/json.h -include/jellyfish-2.2.4/jellyfish/large_hash_array.hpp -include/jellyfish-2.2.4/jellyfish/large_hash_iterator.hpp -include/jellyfish-2.2.4/jellyfish/locks_pthread.hpp -include/jellyfish-2.2.4/jellyfish/mapped_file.hpp -include/jellyfish-2.2.4/jellyfish/mer_dna.hpp -include/jellyfish-2.2.4/jellyfish/mer_dna_bloom_counter.hpp -include/jellyfish-2.2.4/jellyfish/mer_heap.hpp -include/jellyfish-2.2.4/jellyfish/mer_iterator.hpp -include/jellyfish-2.2.4/jellyfish/mer_overlap_sequence_parser.hpp -include/jellyfish-2.2.4/jellyfish/mer_qual_iterator.hpp -include/jellyfish-2.2.4/jellyfish/misc.hpp -include/jellyfish-2.2.4/jellyfish/offsets_key_value.hpp -include/jellyfish-2.2.4/jellyfish/rectangular_binary_matrix.hpp -include/jellyfish-2.2.4/jellyfish/simple_circular_buffer.hpp -include/jellyfish-2.2.4/jellyfish/sorted_dumper.hpp -include/jellyfish-2.2.4/jellyfish/stdio_filebuf.hpp -include/jellyfish-2.2.4/jellyfish/storage.hpp -include/jellyfish-2.2.4/jellyfish/stream_iterator.hpp -include/jellyfish-2.2.4/jellyfish/stream_manager.hpp -include/jellyfish-2.2.4/jellyfish/text_dumper.hpp -include/jellyfish-2.2.4/jellyfish/thread_exec.hpp -include/jellyfish-2.2.4/jellyfish/time.hpp -include/jellyfish-2.2.4/jellyfish/token_ring.hpp -include/jellyfish-2.2.4/jellyfish/whole_sequence_parser.hpp +include/jellyfish-2.2.6/jellyfish/allocators_mmap.hpp +include/jellyfish-2.2.6/jellyfish/atomic_bits_array.hpp +include/jellyfish-2.2.6/jellyfish/atomic_field.hpp +include/jellyfish-2.2.6/jellyfish/atomic_gcc.hpp +include/jellyfish-2.2.6/jellyfish/backtrace.hpp +include/jellyfish-2.2.6/jellyfish/binary_dumper.hpp +include/jellyfish-2.2.6/jellyfish/bloom_common.hpp +include/jellyfish-2.2.6/jellyfish/bloom_counter2.hpp +include/jellyfish-2.2.6/jellyfish/bloom_filter.hpp +include/jellyfish-2.2.6/jellyfish/circular_buffer.hpp +include/jellyfish-2.2.6/jellyfish/compare_and_swap.hpp +include/jellyfish-2.2.6/jellyfish/cooperative_pool.hpp +include/jellyfish-2.2.6/jellyfish/cooperative_pool2.hpp +include/jellyfish-2.2.6/jellyfish/cpp_array.hpp +include/jellyfish-2.2.6/jellyfish/divisor.hpp +include/jellyfish-2.2.6/jellyfish/dumper.hpp +include/jellyfish-2.2.6/jellyfish/err.hpp +include/jellyfish-2.2.6/jellyfish/file_header.hpp +include/jellyfish-2.2.6/jellyfish/generator_manager.hpp +include/jellyfish-2.2.6/jellyfish/generic_file_header.hpp +include/jellyfish-2.2.6/jellyfish/hash_counter.hpp +include/jellyfish-2.2.6/jellyfish/int128.hpp +include/jellyfish-2.2.6/jellyfish/jellyfish.hpp +include/jellyfish-2.2.6/jellyfish/json.h +include/jellyfish-2.2.6/jellyfish/large_hash_array.hpp +include/jellyfish-2.2.6/jellyfish/large_hash_iterator.hpp +include/jellyfish-2.2.6/jellyfish/locks_pthread.hpp +include/jellyfish-2.2.6/jellyfish/mapped_file.hpp +include/jellyfish-2.2.6/jellyfish/mer_dna.hpp +include/jellyfish-2.2.6/jellyfish/mer_dna_bloom_counter.hpp +include/jellyfish-2.2.6/jellyfish/mer_heap.hpp +include/jellyfish-2.2.6/jellyfish/mer_iterator.hpp +include/jellyfish-2.2.6/jellyfish/mer_overlap_sequence_parser.hpp +include/jellyfish-2.2.6/jellyfish/mer_qual_iterator.hpp +include/jellyfish-2.2.6/jellyfish/misc.hpp +include/jellyfish-2.2.6/jellyfish/offsets_key_value.hpp +include/jellyfish-2.2.6/jellyfish/rectangular_binary_matrix.hpp +include/jellyfish-2.2.6/jellyfish/simple_circular_buffer.hpp +include/jellyfish-2.2.6/jellyfish/sorted_dumper.hpp +include/jellyfish-2.2.6/jellyfish/stdio_filebuf.hpp +include/jellyfish-2.2.6/jellyfish/storage.hpp +include/jellyfish-2.2.6/jellyfish/stream_iterator.hpp +include/jellyfish-2.2.6/jellyfish/stream_manager.hpp +include/jellyfish-2.2.6/jellyfish/text_dumper.hpp +include/jellyfish-2.2.6/jellyfish/thread_exec.hpp +include/jellyfish-2.2.6/jellyfish/time.hpp +include/jellyfish-2.2.6/jellyfish/token_ring.hpp +include/jellyfish-2.2.6/jellyfish/whole_sequence_parser.hpp lib/libjellyfish-2.0.a lib/libjellyfish-2.0.so lib/libjellyfish-2.0.so.2