Index: head/math/Makefile =================================================================== --- head/math/Makefile +++ head/math/Makefile @@ -277,6 +277,7 @@ SUBDIR += libRmath SUBDIR += libflame SUBDIR += liblbfgs + SUBDIR += libmesh SUBDIR += libmissing SUBDIR += libocas SUBDIR += liborigin Index: head/math/libmesh/Makefile =================================================================== --- head/math/libmesh/Makefile +++ head/math/libmesh/Makefile @@ -0,0 +1,82 @@ +# Created by: Yuri Victorovich +# $FreeBSD$ + +PORTNAME= libmesh +DISTVERSIONPREFIX= v +DISTVERSION= 1.2.1 +CATEGORIES= math + +MAINTAINER= yuri@FreeBSD.org +COMMENT= Numerical simulation of partial differential equations + +LICENSE= LGPL21 +LICENSE_FILE= ${WRKSRC}/COPYING + +BUILD_DEPENDS= eigen>0:math/eigen3 +LIB_DEPENDS= libboost_system.so:devel/boost-libs + +USES= autoreconf gmake libtool +GNU_CONFIGURE= yes +USE_GITHUB= yes +GH_ACCOUNT= libMesh +CONFIGURE_ARGS= --with-methods=opt \ + --with-thread-model=pthread \ + --datarootdir=${DATADIR} \ + --enable-amr \ + --disable-strict-lgpl \ + --enable-tetgen \ + --enable-triagle \ + --with-boost=${LOCALBASE} \ + --with-eigen-include=${LOCALBASE}/include/eigen3 \ + --disable-netcdf --disable-netcdf-4 # https://github.com/libMesh/libmesh/issues/1542 +MAKE_ARGS= LDFLAGS="-pthread -lexecinfo" +USE_LDCONFIG= yes + +OPTIONS_DEFINE= GLPK HDF5 MPI SFCURVES EXAMPLES +OPTIONS_DEFAULT= MPI SFCURVES +GLPK_DESC= Glpk linear programming solver library +SFCURVES_DESC= Sfcurves library + +GLPK_CONFIGURE_ENABLE= glpk +GLPK_LIB_DEPENDS= libglpk.so:math/glpk +HDF5_CONFIGURE_ENABLE= hdf5 +HDF5_LIB_DEPENDS= libhdf5.so:science/hdf5 +MPI_CONFIGURE_ENABLE= mpi +FSCURVES_CONFIGURE_ENABLE= sfc +EXAMPLES_CONFIGURE_ENABLE= examples +EXAMPLES_VARS= PKGMESSAGE=pkg-message-examples +SUB_FILES= pkg-message-examples + +PORTEXAMPLES= * + +post-extract: + @${FIND} ${WRKSRC} -name "*.orig" -delete + +post-install: + @${MKDIR} ${STAGEDIR}${DATADIR} + @${MV} ${STAGEDIR}${PREFIX}/etc/libmesh/Make.common ${STAGEDIR}${DATADIR} + @cd ${STAGEDIR}${PREFIX} && ${RM} -r \ + etc/libmesh \ + Make.common \ + contrib \ + libdata/pkgconfig/Make.common # https://github.com/libMesh/libmesh/issues/1539 + @${STRIP_CMD} ${STAGEDIR}${PREFIX}/lib/libmesh_opt.so.0.0.0 + +post-install-EXAMPLES-on: + # https://github.com/libMesh/libmesh/issues/1541 + @${MV} ${STAGEDIR}${PREFIX}/examples ${STAGEDIR}${EXAMPLESDIR} + @${FIND} ${STAGEDIR}${EXAMPLESDIR} -name Makefile | ${XARGS} ${REINPLACE_CMD} -i '' -e ' \ + s|LIBMESH_DIR ?= .*|LIBMESH_DIR ?= ${PREFIX}| ; \ + s|$$(LIBMESH_DIR)/Make.common|${DATADIR}/Make.common| ; \ + s|LIBMESH_DIR/examples|LIBMESH_DIR/share/examples/${PORTNAME}| ; \ + s|$$(libmesh_LDFLAGS)|$$(libmesh_LDFLAGS) -pthread|' + @${FIND} ${STAGEDIR}${EXAMPLESDIR} -name run.sh | ${XARGS} ${CHMOD} +x + @${FIND} ${STAGEDIR}${EXAMPLESDIR} -name run.sh | ${XARGS} ${REINPLACE_CMD} -i '' -e ' \ + s|#set -x|export LIBMESH_DIR=${PREFIX}| ; \ + s|#!/bin/bash|#!${LOCALBASE}/bin/bash| ; \ + s|LIBMESH_DIR/examples|LIBMESH_DIR/share/examples/${PORTNAME}| ; \ + s|reference_elements|share/${PORTNAME}/reference_elements|' + @${REINPLACE_CMD} -i '' -e 's|libmesh_LIBTOOL ?= /usr/local/contrib/bin/libtool|libmesh_LIBTOOL ?= libtool|' \ + ${STAGEDIR}${DATADIR}/Make.common + +.include Index: head/math/libmesh/distinfo =================================================================== --- head/math/libmesh/distinfo +++ head/math/libmesh/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1513454802 +SHA256 (libMesh-libmesh-v1.2.1_GH0.tar.gz) = 58f5a0ccc4858aa9ff6b3af9ee23b196e5ff5210708a6bb582102fcce1adeb1f +SIZE (libMesh-libmesh-v1.2.1_GH0.tar.gz) = 31265692 Index: head/math/libmesh/files/patch-Makefile.am =================================================================== --- head/math/libmesh/files/patch-Makefile.am +++ head/math/libmesh/files/patch-Makefile.am @@ -0,0 +1,14 @@ +--- Makefile.am.orig 2017-07-25 16:33:31 UTC ++++ Makefile.am +@@ -102,9 +102,8 @@ install-data-hook: + fi + cd $(DESTDIR)$(prefix) && rm -f Make.common && $(LN_S) -f etc/libmesh/Make.common Make.common + cat $(DESTDIR)$(libmesh_configdir)/libmesh-config | $(SED) "s/has_been_installed=no/has_been_installed=yes/g" > $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed +- mv $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed $(DESTDIR)$(libmesh_configdir)/libmesh-config && chmod +x $(DESTDIR)$(libmesh_configdir)/libmesh-config +- cat $(DESTDIR)$(prefix)/contrib/bin/libtool | $(SED) "s/-l //g" > $(DESTDIR)$(prefix)/contrib/bin/libtool.fixed +- mv $(DESTDIR)$(prefix)/contrib/bin/libtool.fixed $(DESTDIR)$(prefix)/contrib/bin/libtool && chmod +x $(DESTDIR)$(prefix)/contrib/bin/libtool ++ install -c $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed $(DESTDIR)$(libmesh_configdir)/libmesh-config ++ rm $(DESTDIR)$(libmesh_configdir)/libmesh-config.installed + + + # this rule invokes emacs on each source file to remove trailing whitespace. Index: head/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac =================================================================== --- head/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac +++ head/math/libmesh/files/patch-contrib_netcdf_4.4.1.1_configure.ac @@ -0,0 +1,11 @@ +--- contrib/netcdf/4.4.1.1/configure.ac.orig 2017-07-25 16:33:31 UTC ++++ contrib/netcdf/4.4.1.1/configure.ac +@@ -926,7 +926,7 @@ if test "x$enable_netcdf_4" = xyes; then + if test "x$nc_dlfcn_h_missing" = xyes; then + AC_MSG_ERROR([Cannot find dlfcn.h, yet --enable-dynamic-loading was used.]) + fi +- AC_CHECK_LIB([dl],[dlopen], [], [AC_MSG_ERROR([Can't find or link against libdf. See config.log for errors.])]) ++ #AC_CHECK_LIB([dl],[dlopen], [], [AC_MSG_ERROR([Can't find or link against libdf. See config.log for errors.])]) + AC_DEFINE([USE_LIBDL],[1], [if true, enable dynamic loading support]) + fi + Index: head/math/libmesh/files/patch-m4_libtool.m4 =================================================================== --- head/math/libmesh/files/patch-m4_libtool.m4 +++ head/math/libmesh/files/patch-m4_libtool.m4 @@ -0,0 +1,20 @@ +--- m4/libtool.m4.orig 2017-07-25 16:33:31 UTC ++++ m4/libtool.m4 +@@ -1948,7 +1948,7 @@ else + darwin*) + # if libdl is installed we need to link against it + AC_CHECK_LIB([dl], [dlopen], +- [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=-ldl],[ ++ [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=],[ + lt_cv_dlopen=dyld + lt_cv_dlopen_libs= + lt_cv_dlopen_self=yes +@@ -1971,7 +1971,7 @@ else + [AC_CHECK_FUNC([dlopen], + [lt_cv_dlopen=dlopen], + [AC_CHECK_LIB([dl], [dlopen], +- [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=-ldl], ++ [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=], + [AC_CHECK_LIB([svld], [dlopen], + [lt_cv_dlopen=dlopen lt_cv_dlopen_libs=-lsvld], + [AC_CHECK_LIB([dld], [dld_link], Index: head/math/libmesh/files/pkg-message-examples.in =================================================================== --- head/math/libmesh/files/pkg-message-examples.in +++ head/math/libmesh/files/pkg-message-examples.in @@ -0,0 +1,13 @@ +====================================================================== +You installed libMesh, the library for numerical mesh simulations. + +You can run examples using for instance such command: + +$ cd %%EXAMPLESDIR%%/adaptivity/ex3 && gmake example-opt && ./run.sh + +Before running examples, please allow your user the write access: + +# chown -R {your-user}:users %%EXAMPLESDIR%% + +Examples require bash, gmake, libtool installed. +====================================================================== Index: head/math/libmesh/pkg-descr =================================================================== --- head/math/libmesh/pkg-descr +++ head/math/libmesh/pkg-descr @@ -0,0 +1,12 @@ +The libMesh library provides a framework for the numerical simulation of partial +differential equations using arbitrary unstructured discretizations on serial +and parallel platforms. A major goal of the library is to provide support for +adaptive mesh refinement (AMR) computations in parallel while allowing a +research scientist to focus on the physics they are modeling. + +libMesh is based on this publication: +A C++ Library for Parallel Adaptive Mesh Refinement/Coarsening Simulations," +Engineering with Computers, vol. 22, no. 3-4, pp. 237-254, 2006, +http://dx.doi.org/10.1007/s00366-006-0049-3 + +WWW: http://libmesh.github.io Index: head/math/libmesh/pkg-plist =================================================================== --- head/math/libmesh/pkg-plist +++ head/math/libmesh/pkg-plist @@ -0,0 +1,456 @@ +bin/calculator-opt +bin/compare-opt +bin/fparser_parse-opt +bin/getpot_parse-opt +bin/libmesh-config +bin/meshavg-opt +bin/meshbcid-opt +bin/meshdiff-opt +bin/meshid-opt +bin/meshnorm-opt +bin/meshplot-opt +bin/meshtool-opt +bin/output_libmesh_version-opt +bin/projection-opt +bin/solution_components-opt +bin/splitter-opt +include/libmesh/abaqus_io.h +include/libmesh/adaptive_time_solver.h +include/libmesh/adjoint_refinement_estimator.h +include/libmesh/adjoint_residual_error_estimator.h +include/libmesh/analytic_function.h +include/libmesh/auto_ptr.h +include/libmesh/boundary_info.h +include/libmesh/boundary_mesh.h +include/libmesh/boundary_volume_solution_transfer.h +include/libmesh/bounding_box.h +include/libmesh/cell.h +include/libmesh/cell_hex.h +include/libmesh/cell_hex20.h +include/libmesh/cell_hex27.h +include/libmesh/cell_hex8.h +include/libmesh/cell_inf.h +include/libmesh/cell_inf_hex.h +include/libmesh/cell_inf_hex16.h +include/libmesh/cell_inf_hex18.h +include/libmesh/cell_inf_hex8.h +include/libmesh/cell_inf_prism.h +include/libmesh/cell_inf_prism12.h +include/libmesh/cell_inf_prism6.h +include/libmesh/cell_prism.h +include/libmesh/cell_prism15.h +include/libmesh/cell_prism18.h +include/libmesh/cell_prism6.h +include/libmesh/cell_pyramid.h +include/libmesh/cell_pyramid13.h +include/libmesh/cell_pyramid14.h +include/libmesh/cell_pyramid5.h +include/libmesh/cell_tet.h +include/libmesh/cell_tet10.h +include/libmesh/cell_tet4.h +include/libmesh/centroid_partitioner.h +include/libmesh/checkpoint_io.h +include/libmesh/compare_types.h +include/libmesh/composite_fem_function.h +include/libmesh/composite_function.h +include/libmesh/condensed_eigen_system.h +include/libmesh/const_fem_function.h +include/libmesh/const_function.h +include/libmesh/continuation_system.h +include/libmesh/coupling_matrix.h +include/libmesh/default_coupling.h +include/libmesh/dense_matrix.h +include/libmesh/dense_matrix_base.h +include/libmesh/dense_submatrix.h +include/libmesh/dense_subvector.h +include/libmesh/dense_vector.h +include/libmesh/dense_vector_base.h +include/libmesh/dg_fem_context.h +include/libmesh/diff_context.h +include/libmesh/diff_physics.h +include/libmesh/diff_qoi.h +include/libmesh/diff_solver.h +include/libmesh/diff_system.h +include/libmesh/direct_solution_transfer.h +include/libmesh/dirichlet_boundaries.h +include/libmesh/discontinuity_measure.h +include/libmesh/distributed_mesh.h +include/libmesh/distributed_vector.h +include/libmesh/dof_map.h +include/libmesh/dof_object.h +include/libmesh/dtk_adapter.h +include/libmesh/dtk_evaluator.h +include/libmesh/dtk_solution_transfer.h +include/libmesh/edge.h +include/libmesh/edge_edge2.h +include/libmesh/edge_edge3.h +include/libmesh/edge_edge4.h +include/libmesh/edge_inf_edge2.h +include/libmesh/eigen_core_support.h +include/libmesh/eigen_preconditioner.h +include/libmesh/eigen_solver.h +include/libmesh/eigen_sparse_linear_solver.h +include/libmesh/eigen_sparse_matrix.h +include/libmesh/eigen_sparse_vector.h +include/libmesh/eigen_system.h +include/libmesh/eigen_time_solver.h +include/libmesh/elem.h +include/libmesh/elem_assembly.h +include/libmesh/elem_cutter.h +include/libmesh/elem_hash.h +include/libmesh/elem_quality.h +include/libmesh/elem_range.h +include/libmesh/ensight_io.h +include/libmesh/enum_convergence_flags.h +include/libmesh/enum_eigen_solver_type.h +include/libmesh/enum_elem_quality.h +include/libmesh/enum_elem_type.h +include/libmesh/enum_error_estimator_type.h +include/libmesh/enum_fe_family.h +include/libmesh/enum_inf_map_type.h +include/libmesh/enum_io_package.h +include/libmesh/enum_norm_type.h +include/libmesh/enum_order.h +include/libmesh/enum_parallel_type.h +include/libmesh/enum_point_locator_type.h +include/libmesh/enum_preconditioner_type.h +include/libmesh/enum_quadrature_type.h +include/libmesh/enum_solver_package.h +include/libmesh/enum_solver_type.h +include/libmesh/enum_subset_solve_mode.h +include/libmesh/enum_xdr_mode.h +include/libmesh/equation_systems.h +include/libmesh/error_estimator.h +include/libmesh/error_vector.h +include/libmesh/euler2_solver.h +include/libmesh/euler_solver.h +include/libmesh/exact_error_estimator.h +include/libmesh/exact_solution.h +include/libmesh/exodusII_io.h +include/libmesh/explicit_system.h +include/libmesh/face.h +include/libmesh/face_inf_quad.h +include/libmesh/face_inf_quad4.h +include/libmesh/face_inf_quad6.h +include/libmesh/face_quad.h +include/libmesh/face_quad4.h +include/libmesh/face_quad4_shell.h +include/libmesh/face_quad8.h +include/libmesh/face_quad9.h +include/libmesh/face_tri.h +include/libmesh/face_tri3.h +include/libmesh/face_tri3_shell.h +include/libmesh/face_tri3_subdivision.h +include/libmesh/face_tri6.h +include/libmesh/factory.h +include/libmesh/fe.h +include/libmesh/fe_abstract.h +include/libmesh/fe_base.h +include/libmesh/fe_compute_data.h +include/libmesh/fe_interface.h +include/libmesh/fe_macro.h +include/libmesh/fe_map.h +include/libmesh/fe_transformation_base.h +include/libmesh/fe_type.h +include/libmesh/fe_xyz_map.h +include/libmesh/fem_context.h +include/libmesh/fem_function_base.h +include/libmesh/fem_physics.h +include/libmesh/fem_system.h +include/libmesh/first_order_unsteady_solver.h +include/libmesh/fourth_error_estimators.h +include/libmesh/fparser.hh +include/libmesh/fparser_ad.hh +include/libmesh/frequency_system.h +include/libmesh/fro_io.h +include/libmesh/function_base.h +include/libmesh/getpot.h +include/libmesh/ghost_point_neighbors.h +include/libmesh/ghosting_functor.h +include/libmesh/gmsh_io.h +include/libmesh/gmv_io.h +include/libmesh/gnuplot_io.h +include/libmesh/h1_fe_transformation.h +include/libmesh/hashword.h +include/libmesh/hcurl_fe_transformation.h +include/libmesh/hilbert_sfc_partitioner.h +include/libmesh/hp_coarsentest.h +include/libmesh/hp_selector.h +include/libmesh/hp_singular.h +include/libmesh/id_types.h +include/libmesh/ignore_warnings.h +include/libmesh/implicit_system.h +include/libmesh/inf_elem_builder.h +include/libmesh/inf_fe.h +include/libmesh/inf_fe_instantiate_1D.h +include/libmesh/inf_fe_instantiate_2D.h +include/libmesh/inf_fe_instantiate_3D.h +include/libmesh/inf_fe_macro.h +include/libmesh/jump_error_estimator.h +include/libmesh/kelly_error_estimator.h +include/libmesh/libmesh.h +include/libmesh/libmesh_C_isnan.h +include/libmesh/libmesh_base.h +include/libmesh/libmesh_common.h +include/libmesh/libmesh_config.h +include/libmesh/libmesh_documentation.h +include/libmesh/libmesh_exceptions.h +include/libmesh/libmesh_logging.h +include/libmesh/libmesh_nullptr.h +include/libmesh/libmesh_singleton.h +include/libmesh/libmesh_version.h +include/libmesh/linear_implicit_system.h +include/libmesh/linear_partitioner.h +include/libmesh/linear_solver.h +include/libmesh/location_maps.h +include/libmesh/mapped_subdomain_partitioner.h +include/libmesh/mapvector.h +include/libmesh/matlab_io.h +include/libmesh/medit_io.h +include/libmesh/memory_solution_history.h +include/libmesh/mesh.h +include/libmesh/mesh_base.h +include/libmesh/mesh_communication.h +include/libmesh/mesh_function.h +include/libmesh/mesh_generation.h +include/libmesh/mesh_input.h +include/libmesh/mesh_inserter_iterator.h +include/libmesh/mesh_modification.h +include/libmesh/mesh_output.h +include/libmesh/mesh_refinement.h +include/libmesh/mesh_serializer.h +include/libmesh/mesh_smoother.h +include/libmesh/mesh_smoother_laplace.h +include/libmesh/mesh_smoother_vsmoother.h +include/libmesh/mesh_subdivision_support.h +include/libmesh/mesh_tetgen_interface.h +include/libmesh/mesh_tetgen_wrapper.h +include/libmesh/mesh_tools.h +include/libmesh/mesh_triangle_holes.h +include/libmesh/mesh_triangle_interface.h +include/libmesh/mesh_triangle_wrapper.h +include/libmesh/meshfree_interpolation.h +include/libmesh/meshfree_solution_transfer.h +include/libmesh/meshfunction_solution_transfer.h +include/libmesh/metis_csr_graph.h +include/libmesh/metis_partitioner.h +include/libmesh/morton_sfc_partitioner.h +include/libmesh/multi_predicates.h +include/libmesh/namebased_io.h +include/libmesh/nanoflann.hpp +include/libmesh/nemesis_io.h +include/libmesh/newmark_solver.h +include/libmesh/newmark_system.h +include/libmesh/newton_solver.h +include/libmesh/nlopt_optimization_solver.h +include/libmesh/no_solution_history.h +include/libmesh/node.h +include/libmesh/node_elem.h +include/libmesh/node_range.h +include/libmesh/nonlinear_implicit_system.h +include/libmesh/nonlinear_solver.h +include/libmesh/null_output_iterator.h +include/libmesh/number_lookups.h +include/libmesh/numeric_vector.h +include/libmesh/off_io.h +include/libmesh/optimization_solver.h +include/libmesh/optimization_system.h +include/libmesh/ostream_proxy.h +include/libmesh/parallel.h +include/libmesh/parallel_algebra.h +include/libmesh/parallel_bin_sorter.h +include/libmesh/parallel_communicator_specializations +include/libmesh/parallel_elem.h +include/libmesh/parallel_ghost_sync.h +include/libmesh/parallel_histogram.h +include/libmesh/parallel_implementation.h +include/libmesh/parallel_mesh.h +include/libmesh/parallel_node.h +include/libmesh/parallel_object.h +include/libmesh/parallel_sort.h +include/libmesh/parameter_accessor.h +include/libmesh/parameter_multiaccessor.h +include/libmesh/parameter_multipointer.h +include/libmesh/parameter_pointer.h +include/libmesh/parameter_vector.h +include/libmesh/parameters.h +include/libmesh/parmetis_partitioner.h +include/libmesh/parsed_fem_function.h +include/libmesh/parsed_fem_function_parameter.h +include/libmesh/parsed_function.h +include/libmesh/parsed_function_parameter.h +include/libmesh/partitioner.h +include/libmesh/patch.h +include/libmesh/patch_recovery_error_estimator.h +include/libmesh/perf_log.h +include/libmesh/perfmon.h +include/libmesh/periodic_boundaries.h +include/libmesh/periodic_boundary.h +include/libmesh/periodic_boundary_base.h +include/libmesh/petsc_auto_fieldsplit.h +include/libmesh/petsc_diff_solver.h +include/libmesh/petsc_linear_solver.h +include/libmesh/petsc_macro.h +include/libmesh/petsc_matrix.h +include/libmesh/petsc_nonlinear_solver.h +include/libmesh/petsc_preconditioner.h +include/libmesh/petsc_solver_exception.h +include/libmesh/petsc_vector.h +include/libmesh/petscdmlibmesh.h +include/libmesh/plane.h +include/libmesh/plt_loader.h +include/libmesh/point.h +include/libmesh/point_locator_base.h +include/libmesh/point_locator_tree.h +include/libmesh/point_neighbor_coupling.h +include/libmesh/pool_allocator.h +include/libmesh/postscript_io.h +include/libmesh/preconditioner.h +include/libmesh/print_trace.h +include/libmesh/qoi_set.h +include/libmesh/quadrature.h +include/libmesh/quadrature_clough.h +include/libmesh/quadrature_composite.h +include/libmesh/quadrature_conical.h +include/libmesh/quadrature_gauss.h +include/libmesh/quadrature_gauss_lobatto.h +include/libmesh/quadrature_gm.h +include/libmesh/quadrature_grid.h +include/libmesh/quadrature_jacobi.h +include/libmesh/quadrature_monomial.h +include/libmesh/quadrature_simpson.h +include/libmesh/quadrature_trap.h +include/libmesh/radial_basis_functions.h +include/libmesh/radial_basis_interpolation.h +include/libmesh/raw_accessor.h +include/libmesh/rb_assembly_expansion.h +include/libmesh/rb_construction.h +include/libmesh/rb_construction_base.h +include/libmesh/rb_data_deserialization.h +include/libmesh/rb_data_serialization.h +include/libmesh/rb_eim_assembly.h +include/libmesh/rb_eim_construction.h +include/libmesh/rb_eim_evaluation.h +include/libmesh/rb_eim_theta.h +include/libmesh/rb_evaluation.h +include/libmesh/rb_parameters.h +include/libmesh/rb_parametrized.h +include/libmesh/rb_parametrized_function.h +include/libmesh/rb_scm_construction.h +include/libmesh/rb_scm_evaluation.h +include/libmesh/rb_temporal_discretization.h +include/libmesh/rb_theta.h +include/libmesh/rb_theta_expansion.h +include/libmesh/reference_counted_object.h +include/libmesh/reference_counter.h +include/libmesh/reference_elem.h +include/libmesh/refinement_selector.h +include/libmesh/remote_elem.h +include/libmesh/replicated_mesh.h +include/libmesh/restore_warnings.h +include/libmesh/safe_bool.h +include/libmesh/second_order_unsteady_solver.h +include/libmesh/sensitivity_data.h +include/libmesh/serial_mesh.h +include/libmesh/sfc_partitioner.h +include/libmesh/shell_matrix.h +include/libmesh/sibling_coupling.h +include/libmesh/side.h +include/libmesh/single_predicates.h +include/libmesh/slepc_eigen_solver.h +include/libmesh/slepc_macro.h +include/libmesh/solution_history.h +include/libmesh/solution_transfer.h +include/libmesh/solver_configuration.h +include/libmesh/sparse_matrix.h +include/libmesh/sparse_shell_matrix.h +include/libmesh/sparsity_pattern.h +include/libmesh/sphere.h +include/libmesh/statistics.h +include/libmesh/steady_solver.h +include/libmesh/steady_system.h +include/libmesh/stored_range.h +include/libmesh/string_to_enum.h +include/libmesh/subdomain_partitioner.h +include/libmesh/sum_shell_matrix.h +include/libmesh/surface.h +include/libmesh/system.h +include/libmesh/system_norm.h +include/libmesh/system_subset.h +include/libmesh/system_subset_by_subdomain.h +include/libmesh/tao_optimization_solver.h +include/libmesh/tecplot_io.h +include/libmesh/tensor_shell_matrix.h +include/libmesh/tensor_tools.h +include/libmesh/tensor_value.h +include/libmesh/tetgen.h +include/libmesh/tetgen_io.h +include/libmesh/threads.h +include/libmesh/threads_allocators.h +include/libmesh/threads_none.h +include/libmesh/threads_pthread.h +include/libmesh/threads_tbb.h +include/libmesh/time_solver.h +include/libmesh/timestamp.h +include/libmesh/topology_map.h +include/libmesh/transient_rb_assembly_expansion.h +include/libmesh/transient_rb_construction.h +include/libmesh/transient_rb_evaluation.h +include/libmesh/transient_rb_theta_expansion.h +include/libmesh/transient_system.h +include/libmesh/tree.h +include/libmesh/tree_base.h +include/libmesh/tree_node.h +include/libmesh/triangle.h +include/libmesh/trilinos_aztec_linear_solver.h +include/libmesh/trilinos_epetra_matrix.h +include/libmesh/trilinos_epetra_vector.h +include/libmesh/trilinos_nox_nonlinear_solver.h +include/libmesh/trilinos_preconditioner.h +include/libmesh/twostep_time_solver.h +include/libmesh/type_n_tensor.h +include/libmesh/type_tensor.h +include/libmesh/type_vector.h +include/libmesh/ucd_io.h +include/libmesh/uniform_refinement_estimator.h +include/libmesh/unsteady_solver.h +include/libmesh/unstructured_mesh.h +include/libmesh/unv_io.h +include/libmesh/utility.h +include/libmesh/variable.h +include/libmesh/variant_filter_iterator.h +include/libmesh/vector_value.h +include/libmesh/vectormap.h +include/libmesh/vtk_io.h +include/libmesh/weighted_patch_recovery_error_estimator.h +include/libmesh/wrapped_function.h +include/libmesh/wrapped_functor.h +include/libmesh/xdr_cxx.h +include/libmesh/xdr_io.h +include/libmesh/zero_function.h +lib/libmesh_opt.so +lib/libmesh_opt.so.0 +lib/libmesh_opt.so.0.0.0 +libdata/pkgconfig/libmesh-dbg.pc +libdata/pkgconfig/libmesh-devel.pc +libdata/pkgconfig/libmesh-oprof.pc +libdata/pkgconfig/libmesh-opt.pc +libdata/pkgconfig/libmesh-prof.pc +libdata/pkgconfig/libmesh.pc +%%DATADIR%%/reference_elements/2D/one_quad.xda +%%DATADIR%%/reference_elements/2D/one_quad8.xda +%%DATADIR%%/reference_elements/2D/one_quad9.xda +%%DATADIR%%/reference_elements/2D/one_tri.xda +%%DATADIR%%/reference_elements/2D/one_tri6.xda +%%DATADIR%%/reference_elements/3D/one_hex.xda +%%DATADIR%%/reference_elements/3D/one_hex20.xda +%%DATADIR%%/reference_elements/3D/one_hex27.xda +%%DATADIR%%/reference_elements/3D/one_prism.xda +%%DATADIR%%/reference_elements/3D/one_prism15.xda +%%DATADIR%%/reference_elements/3D/one_prism18.xda +%%DATADIR%%/reference_elements/3D/one_pyramid.xda +%%DATADIR%%/reference_elements/3D/one_pyramid13.xda +%%DATADIR%%/reference_elements/3D/one_pyramid14.xda +%%DATADIR%%/reference_elements/3D/one_tet.xda +%%DATADIR%%/reference_elements/3D/one_tet10.xda +%%DATADIR%%/Make.common