Index: biology/py-macs2/Makefile =================================================================== --- /dev/null +++ biology/py-macs2/Makefile @@ -0,0 +1,32 @@ +# $FreeBSD$ + +PORTNAME= macs2 +PORTVERSION= 2017.05.05 +CATEGORIES= biology python +PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX} + +MAINTAINER= jwb@FreeBSD.org +COMMENT= Analysis of chromatin immunoprecipitation (ChIP) sequences + +LICENSE= BSD3CLAUSE +LICENSE_FILE= ${WRKSRC}/COPYING + +BUILD_DEPENDS= ${PYTHON_PKGNAMEPREFIX}numpy>0:math/py-numpy@${PY_FLAVOR} + +USES= python +USE_PYTHON= autoplist cython distutils + +USE_GITHUB= yes +GH_ACCOUNT= taoliu +GH_PROJECT= MACS +GH_TAGNAME= 6946b2f6571cd0a7cfbb882c79aaa25a05a5c48d + +post-patch: + ${MV} -f ${WRKSRC}/setup_w_cython.py ${WRKSRC}/setup.py + +post-stage: + ${STRIP_CMD} \ + ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*.so \ + ${STAGEDIR}${PYTHON_SITELIBDIR}/MACS2/*/*.so + +.include Index: biology/py-macs2/distinfo =================================================================== --- /dev/null +++ biology/py-macs2/distinfo @@ -0,0 +1,3 @@ +TIMESTAMP = 1499026534 +SHA256 (taoliu-MACS-2017.05.05-6946b2f6571cd0a7cfbb882c79aaa25a05a5c48d_GH0.tar.gz) = b8c0fd584b724e93147b7a0a622d0ad7281f4d4f0baf8267b5d827b706f08725 +SIZE (taoliu-MACS-2017.05.05-6946b2f6571cd0a7cfbb882c79aaa25a05a5c48d_GH0.tar.gz) = 159560976 Index: biology/py-macs2/pkg-descr =================================================================== --- /dev/null +++ biology/py-macs2/pkg-descr @@ -0,0 +1,6 @@ +MACS is a tool for chromatin immunoprecipitation (ChIP) sequence analysis. +MACS empirically models the length of the sequenced ChIP fragments, which +tend to be shorter than sonication or library construction size estimates, +and uses it to improve the spatial resolution of predicted binding sites. + +WWW: https://github.com/taoliu/MACS